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104 lines
3.5 KiB
Makefile

# Program for compiling MPI cpp programs
CC = mpicxx
CXX = mpicxx
# Extra flags to give to the processor compiler
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CFLAGS = -g -Wall -Werror -Wextra -O3
#
SRC = main.cpp
OBJ = $(SRC:.cpp=.o)
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NAME = sort_big_file
# Check if NODES variable is defined
ifeq ($(filter run, $(MAKECMDGOALS)), run)
ifndef NODES
$(error NODES is not defined. Please define NODES before running the target (make run NODES="1-5"))
endif
endif
# SBATCH parameters
JOBNAME = Distributed_Sorting
PARTITION = production
TIME = 12:00:00
MEM = 3G
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NODELIST = steffe[$(NODES)]
CPUS_PER_TASK = 1
NTASKS_PER_NODE = 1
OUTPUT = ./%x.%j.out
ERROR = ./e%x.%j.err
#
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.PHONY: all run detail clean fclean cleanall re
.o: .cpp
$(CC) -c $(CFLAGS) $< -o $@
all: $(NAME)
$(NAME): $(OBJ)
$(CC) $(CFLAGS) -o $@ $^
run: $(NAME)
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@echo "#!/bin/bash" > launcher.sh; \
echo "## sbatch is the command line interpreter for Slurm" >> launcher.sh; \
echo "" >> launcher.sh; \
echo "## specify the name of the job in the queueing system" >> launcher.sh; \
echo "#SBATCH --job-name=$(JOBNAME)" >> launcher.sh; \
echo "## specify the partition for the resource allocation. if not specified, slurm is allowed to take the default(the one with a star *)" >> launcher.sh; \
echo "#SBATCH --partition=$(PARTITION)" >> launcher.sh; \
echo "## format for time is days-hours:minutes:seconds, is used as time limit for the execution duration" >> launcher.sh; \
echo "#SBATCH --time=$(TIME)" >> launcher.sh; \
echo "## specify the real memory required per node. suffix can be K-M-G-T but if not present is MegaBytes by default" >> launcher.sh; \
echo "#SBATCH --mem=$(MEM)" >> launcher.sh; \
echo "## format for hosts as a range(steffe[1-4,10-15,20]), to specify hosts needed to satisfy resource requirements" >> launcher.sh; \
echo "#SBATCH --nodelist=$(NODELIST)" >> launcher.sh; \
echo "## to specify the number of processors per task, default is one" >> launcher.sh; \
echo "#SBATCH --cpus-per-task=$(CPUS_PER_TASK)" >> launcher.sh; \
echo "## to specify the number of tasks to be invoked on each node" >> launcher.sh; \
echo "#SBATCH --ntasks-per-node=$(NTASKS_PER_NODE)" >> launcher.sh; \
echo "## to specify the file of utput and error" >> launcher.sh; \
echo "#SBATCH --output $(OUTPUT)" >> launcher.sh; \
echo "#SBATCH --error $(ERROR)" >> launcher.sh; \
echo "" >> launcher.sh; \
echo "mpirun $(NAME) $(ARGS)" >> launcher.sh; \
chmod +x launcher.sh; \
echo "The 'launcher.sh' script has been created and is ready to run."; \
@echo; sbatch launcher.sh
@echo " To see job list you can use 'squeue'."
@echo " To cancel a job you can use 'scancel jobid'."
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@echo
@echo " To visualize binary files in bash can be used:"
@echo " od -t d8 -A n binaryfile.bin #For in use format"
@echo " od -t d8 -A n --endian=little binaryfile.bin #For little-endian format"
@echo " od -t d8 -A n --endian=big binaryfile.bin #For big-endian format"
detail:
@echo "Compiler flags and options that mpicxx would use for compiling an MPI program: "
@mpicxx --showme:compile
@echo
@echo "Linker flags and options that mpicxx would use for linking an MPI program: "
@mpicxx --showme:link
clean:
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@echo rm -f ./e$(JOBNAME).*.err
@for file in ./e$(JOBNAME).*.err; do \
rm -f "$$file"; \
done
rm -f *~ $(OBJ)
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fclean:
rm -f ./launcher.sh;
rm -f ./nohup.out
rm -f /mnt/raid/tmp/SortedRun*
rm -f $(NAME)
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cleanall: fclean clean
@echo rm -f ./$(JOBNAME).*.out
@for file in ./$(JOBNAME).*.out; do \
rm -f "$$file"; \
done
rm -f /mnt/raid/tmp/*.sort
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re: fclean all