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104 lines
3.5 KiB
Makefile
104 lines
3.5 KiB
Makefile
# Program for compiling MPI cpp programs
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CC = mpicxx
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CXX = mpicxx
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# Extra flags to give to the processor compiler
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CFLAGS = -g -Wall -Werror -Wextra
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#
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SRC = main.cpp
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OBJ = $(SRC:.cpp=.o)
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NAME = sort_big_file
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# Check if NODES variable is defined
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ifeq ($(filter run, $(MAKECMDGOALS)), run)
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ifndef NODES
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$(error NODES is not defined. Please define NODES before running the target (make run NODES="1-5"))
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endif
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endif
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# SBATCH parameters
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JOBNAME = Distributed_Sorting
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PARTITION = production
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TIME = 12:00:00
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MEM = 3G
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NODELIST = steffe[$(NODES)]
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CPUS_PER_TASK = 1
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NTASKS_PER_NODE = 1
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OUTPUT = ./%x.%j.out
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ERROR = ./e%x.%j.err
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#
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.PHONY: all run detail clean fclean cleanall re
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.o: .cpp
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$(CC) -c $(CFLAGS) $< -o $@
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all: $(NAME)
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$(NAME): $(OBJ)
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$(CC) $(CFLAGS) -o $@ $^
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run: $(NAME)
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@echo "#!/bin/bash" > launcher.sh; \
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echo "## sbatch is the command line interpreter for Slurm" >> launcher.sh; \
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echo "" >> launcher.sh; \
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echo "## specify the name of the job in the queueing system" >> launcher.sh; \
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echo "#SBATCH --job-name=$(JOBNAME)" >> launcher.sh; \
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echo "## specify the partition for the resource allocation. if not specified, slurm is allowed to take the default(the one with a star *)" >> launcher.sh; \
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echo "#SBATCH --partition=$(PARTITION)" >> launcher.sh; \
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echo "## format for time is days-hours:minutes:seconds, is used as time limit for the execution duration" >> launcher.sh; \
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echo "#SBATCH --time=$(TIME)" >> launcher.sh; \
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echo "## specify the real memory required per node. suffix can be K-M-G-T but if not present is MegaBytes by default" >> launcher.sh; \
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echo "#SBATCH --mem=$(MEM)" >> launcher.sh; \
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echo "## format for hosts as a range(steffe[1-4,10-15,20]), to specify hosts needed to satisfy resource requirements" >> launcher.sh; \
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echo "#SBATCH --nodelist=$(NODELIST)" >> launcher.sh; \
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echo "## to specify the number of processors per task, default is one" >> launcher.sh; \
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echo "#SBATCH --cpus-per-task=$(CPUS_PER_TASK)" >> launcher.sh; \
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echo "## to specify the number of tasks to be invoked on each node" >> launcher.sh; \
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echo "#SBATCH --ntasks-per-node=$(NTASKS_PER_NODE)" >> launcher.sh; \
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echo "## to specify the file of utput and error" >> launcher.sh; \
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echo "#SBATCH --output $(OUTPUT)" >> launcher.sh; \
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echo "#SBATCH --error $(ERROR)" >> launcher.sh; \
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echo "" >> launcher.sh; \
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echo "mpirun $(NAME) $(ARGS)" >> launcher.sh; \
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chmod +x launcher.sh; \
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echo "The 'launcher.sh' script has been created and is ready to run."; \
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@echo; sbatch launcher.sh
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@echo " To see job list you can use 'squeue'."
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@echo " To cancel a job you can use 'scancel jobid'."
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@echo
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@echo " To visualize binary files in bash can be used:"
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@echo " od -t d8 -A n binaryfile.bin #For in use format"
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@echo " od -t d8 -A n --endian=little binaryfile.bin #For little-endian format"
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@echo " od -t d8 -A n --endian=big binaryfile.bin #For big-endian format"
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detail:
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@echo "Compiler flags and options that mpicxx would use for compiling an MPI program: "
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@mpicxx --showme:compile
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@echo
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@echo "Linker flags and options that mpicxx would use for linking an MPI program: "
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@mpicxx --showme:link
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clean:
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@echo rm -f ./e$(JOBNAME).*.err
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@for file in ./e$(JOBNAME).*.err; do \
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rm -f "$$file"; \
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done
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rm -f *~ $(OBJ)
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fclean:
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rm -f ./launcher.sh;
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rm -f ./nohup.out
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rm -f /mnt/raid/tmp/SortedRun*
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rm -f $(NAME)
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cleanall: fclean clean
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@echo rm -f ./$(JOBNAME).*.out
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@for file in ./$(JOBNAME).*.out; do \
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rm -f "$$file"; \
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done
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rm -f /mnt/raid/tmp/*.sort
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re: fclean all
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