diff --git a/examples/fdg-example/src/stress_majorization.rs b/examples/fdg-example/src/stress_majorization.rs
index 17a5412..97dbb5e 100644
--- a/examples/fdg-example/src/stress_majorization.rs
+++ b/examples/fdg-example/src/stress_majorization.rs
@@ -1,99 +1,99 @@
-use std::{
-    collections::HashMap,
-    hash::{BuildHasherDefault, Hash},
-    iter::Sum,
-    ops::AddAssign,
-};
+// use std::{
+//     collections::HashMap,
+//     hash::{BuildHasherDefault, Hash},
+//     iter::Sum,
+//     ops::AddAssign,
+// };
 
 // use nalgebra::{Point, SVector};
 // use petgraph::stable_graph::NodeIndex;
 
 // type HashFn = BuildHasherDefault<rustc_hash::FxHasher>;
 
-use fdg::Field;
-use nalgebra::Point;
-
-#[derive(Debug, Clone)]
-pub struct StressMajorizationConfiguration<F: Field> {
-    pub dt: F,
-}
-
-use petgraph::{
-    algo::{dijkstra, Measure},
-    graph::NodeIndex,
-    stable_graph::StableGraph,
-};
-use StressMajorizationConfiguration as Config;
-
-impl<F: Field> Default for Config<F> {
-    fn default() -> Self {
-        Self {
-            dt: F::from(0.035).unwrap(),
-        }
-    }
-}
-
-/// A basic implementation
-#[derive(Debug)]
-pub struct StressMajorization<F: Field, const D: usize> {
-    pub conf: Config<F>,
-    pub shortest_path_matrix: HashMap<NodeIndex, HashMap<NodeIndex, F>>,
-}
-
-impl<F: Field + Measure + Sum, const D: usize> StressMajorization<F, D> {
-    pub fn new(conf: Config<F>) -> Self {
-        Self {
-            conf,
-            shortest_path_matrix: HashMap::new(),
-        }
-    }
-
-    fn apply<N: Clone, E: Clone>(&mut self, graph: &mut StableGraph<(N, Point<F, D>), E>) {
-        // if self.shortest_path_matrix.is_empty() {
-        //     self.shortest_path_matrix = graph
-        //         .node_indices()
-        //         .map(|idx| {
-        //             (idx, )
-        //         })
-        //         .collect();
-        // }
-
-        // let borrowed_graph: &StableGraph<(N, Point<F, D>), E> = graph;
-
-        self.shortest_path_matrix.extend(
-            graph
-                .node_indices()
-                .map(|idx| (idx, dijkstra(graph as &_, idx, None, |_| F::one()))),
-        )
-    }
-
-    fn calc_stress<N: Clone, E: Clone>(
-        &mut self,
-        graph: &mut StableGraph<(N, Point<F, D>), E>,
-    ) -> F {
-        // graph
-        //     .node_indices()
-        //     .flat_map(|v| {
-        //         graph.node_indices().skip(v.index() + 1).map(move |w| {
-        //             let dist = nalgebra::distance(
-        //                 &graph.node_weight(v).unwrap().1,
-        //                 &graph.node_weight(w).unwrap().1,
-        //             );
-
-        //             if dist != F::zero() {
-        //                 let dij = self.shortest_path_matrix[&v][&w];
-
-        //                 let sp_diff = self.shortest_path_matrix[&v][&w] - dist;
-        //                 dij.simd_sqrt().abs() * sp_diff * sp_diff
-        //             } else {
-        //                 F::zero()
-        //             }
-        //         })
-        //     })
-        //     .sum()
-        F::default()
-    }
-}
+// use fdg::Field;
+// use nalgebra::Point;
+
+// #[derive(Debug, Clone)]
+// pub struct StressMajorizationConfiguration<F: Field> {
+//     pub dt: F,
+// }
+
+// use petgraph::{
+//     algo::{dijkstra, Measure},
+//     graph::NodeIndex,
+//     stable_graph::StableGraph,
+// };
+// use StressMajorizationConfiguration as Config;
+
+// impl<F: Field> Default for Config<F> {
+//     fn default() -> Self {
+//         Self {
+//             dt: F::from(0.035).unwrap(),
+//         }
+//     }
+// }
+
+// /// A basic implementation
+// #[derive(Debug)]
+// pub struct StressMajorization<F: Field, const D: usize> {
+//     pub conf: Config<F>,
+//     pub shortest_path_matrix: HashMap<NodeIndex, HashMap<NodeIndex, F>>,
+// }
+
+// impl<F: Field + Measure + Sum, const D: usize> StressMajorization<F, D> {
+//     pub fn new(conf: Config<F>) -> Self {
+//         Self {
+//             conf,
+//             shortest_path_matrix: HashMap::new(),
+//         }
+//     }
+
+//     fn apply<N: Clone, E: Clone>(&mut self, graph: &mut StableGraph<(N, Point<F, D>), E>) {
+//         // if self.shortest_path_matrix.is_empty() {
+//         //     self.shortest_path_matrix = graph
+//         //         .node_indices()
+//         //         .map(|idx| {
+//         //             (idx, )
+//         //         })
+//         //         .collect();
+//         // }
+
+//         // let borrowed_graph: &StableGraph<(N, Point<F, D>), E> = graph;
+
+//         self.shortest_path_matrix.extend(
+//             graph
+//                 .node_indices()
+//                 .map(|idx| (idx, dijkstra(graph as &_, idx, None, |_| F::one()))),
+//         )
+//     }
+
+//     fn calc_stress<N: Clone, E: Clone>(
+//         &mut self,
+//         graph: &mut StableGraph<(N, Point<F, D>), E>,
+//     ) -> F {
+//         // graph
+//         //     .node_indices()
+//         //     .flat_map(|v| {
+//         //         graph.node_indices().skip(v.index() + 1).map(move |w| {
+//         //             let dist = nalgebra::distance(
+//         //                 &graph.node_weight(v).unwrap().1,
+//         //                 &graph.node_weight(w).unwrap().1,
+//         //             );
+
+//         //             if dist != F::zero() {
+//         //                 let dij = self.shortest_path_matrix[&v][&w];
+
+//         //                 let sp_diff = self.shortest_path_matrix[&v][&w] - dist;
+//         //                 dij.simd_sqrt().abs() * sp_diff * sp_diff
+//         //             } else {
+//         //                 F::zero()
+//         //             }
+//         //         })
+//         //     })
+//         //     .sum()
+//         F::default()
+//     }
+// }
 
 // impl<const D: usize, N, E> Force<f32, D, N, E> for StressMajorization<D> {
 //     fn apply(&mut self, graph: &mut ForceGraph<f32, D, N, E>) {
diff --git a/examples/graphs-1/src/gd.rs b/examples/graphs-1/src/gd.rs
index f72f061..59f9080 100644
--- a/examples/graphs-1/src/gd.rs
+++ b/examples/graphs-1/src/gd.rs
@@ -1,6 +1,8 @@
+#![allow(dead_code)]
+
 use std::collections::HashMap;
 
-struct Graph {
+pub struct Graph {
     edges_from: Vec<u32>,
     edges_to: Vec<u32>,
 }
@@ -27,7 +29,7 @@ impl Graph {
 }
 
 pub fn update(
-    graph: &Graph,
+    _graph: &Graph,
     xs: &Vec<f32>,
     ys: &Vec<f32>,
     desired_distance_matrix: &HashMap<usize, HashMap<usize, f32>>,
diff --git a/examples/graphs-1/src/main.rs b/examples/graphs-1/src/main.rs
index b24829f..ddd5e5b 100644
--- a/examples/graphs-1/src/main.rs
+++ b/examples/graphs-1/src/main.rs
@@ -1,13 +1,6 @@
-use std::{
-    collections::HashMap,
-    env,
-    io::{BufRead, BufReader},
-    ops::AddAssign,
-    time::Instant,
-};
+use std::{collections::HashMap, env, ops::AddAssign, time::Instant};
 
 use asd::{gfa::Entry, parser};
-use indicatif::ProgressIterator;
 use macroquad::{prelude::*, rand, ui::root_ui};
 use nalgebra::{Point2, SVector};
 use petgraph::{algo::dijkstra, graph::NodeIndex, stable_graph::StableGraph};
diff --git a/src/gfa.rs b/src/gfa.rs
index 81c2813..f48f376 100644
--- a/src/gfa.rs
+++ b/src/gfa.rs
@@ -15,6 +15,7 @@ impl Display for Orientation {
     }
 }
 
+#[allow(dead_code)]
 #[derive(Debug)]
 pub enum Entry {
     Header {
diff --git a/src/graph.rs b/src/graph.rs
index 43c60f6..346fcd7 100644
--- a/src/graph.rs
+++ b/src/graph.rs
@@ -6,7 +6,7 @@ use std::{
     rc::Rc,
 };
 
-use indicatif::{ProgressIterator, ProgressStyle};
+use indicatif::ProgressIterator;
 
 #[derive(Debug)]
 pub struct AdjacencyGraph<V>
diff --git a/src/parser.rs b/src/parser.rs
index a89b96f..6a93672 100644
--- a/src/parser.rs
+++ b/src/parser.rs
@@ -1,9 +1,8 @@
+#![allow(dead_code)]
+
 use std::{
-    borrow::Cow,
     io::{self, BufRead, BufReader, Read},
     str::FromStr,
-    thread,
-    time::Duration,
 };
 
 use indicatif::ProgressIterator;