psblas3/Changelog

Changelog. A lot less detailed than usual, at least for past
	history.
2017/02/06: Fixes for --enable-long-integers and for RPM build.
2016/07/14: Fix matrix print with renumbering.	
2016/06/18: New thresholds for quicksort	
2016/06/03: New source dir organization	
2016/05/05: Fix fakempi
2016/02/24: Fix init of hash inside cdbldext.
2016/01/06: Default COND to 0.
2015/12/17: Added clean_zeros method to spmat.	
2015/12/14: Fixed mat_dist
2015/12/08: Make LOCX allocatable
2015/12/02: Reworked scatter interfaces.	
2015/10/17: Fix configure for ATLAS packaging.
2015/07/17: Fix cdbldext.
2015/07/10: Begin integration of multivectors.	
2015/04/25: New optional args in V%set. 	
2015/04/14: New absval method for vectors.
	
2015/03/20: Optimizations of  TO/FROM routines, use of is_by_rows in COO.
	
2015/01/05: Fix silly bug in format conversion csr_from_coo.
	
2014/12/21: Change error handling routines to make them more flexible for
            C binding. More compact prologues/epilogues. 
	
2014/11/12: Fix silly bug in MMIO: cycling through rank-2 dense read/write was
            transposing! 	
2014/10/22: Implement norm-1 and norm-infinity at base_sparse_mat relying
	    on srwsum/aclsum.
	
2014/10/15: Merged changes into trunk. Declare version 3.3
	
2014/10/10: Fix recutions when root /= -1	

2014/09/10: Use int32/64 kinds & friends  from ISO_FORTRAN_ENV	
	
2014/08/30: New multivector types. Vector insertion now takes other
  	    vectors as well as arrays. 
	
2014/07/10: CSPUT has now two specifics, with arrays or vector types.
	    	
	
2014/07/02: Matrices have host/device status.	
	
2014/06/11: Check for bug on multiple generic names. 
	
2014/05/05: Make sure CSPUT ignores (at most a warning) indices not
            belonging. 
	
2014/04/14: Sort status in COO. Changes in error handling for CSPUT.
	
2014/03/31: get_diag, rowsum & friends changed into functions. 
	
2014/03/26: TRIL/TRIU interfaces. Fixed mm_array_read/write. 
            Multiple generic names for norms and io.
	
2014/03/18: New defaults for MOLD & friends. 
	
2014/01/27: Fixed error conditions on mmio. 	

2013/12/12: New sparse-sparse matrix product, with CSR-CSR, CSC-CSC new
	    versions, while keeping the old version at hand. 
	
2013/12/04: Fix computation of output space for getrow & friends.
	
2013/12/02: Reimplement coo%fix method: use more memory if available, but
	    faster. Fix small interfacing problems with getrow/getblk/getptn.
	
2013/11/25: Limit usage of coo%fix method.
	
2013/11/07: Merged integer vector changes.
	
2013/10/01: New desc_type methods calling into indxmap methods.
	
2013/09/30: Restructure index conversion methods, simplify.
	
2013/09/26: Simplify checks in  matrix-vector products
	
2013/08/01: Defined new get_fmt method for vectors
	
2013/06/19: Fixed type match bug in daxpby/saxpby/zaxpby. 
	
2013/06/05: Fix INTENT in APPEND methods. 	
2013/05/10: test/serial now contains an example of how to define a new 
	    format.
2013/04/20: Fix scaling and norm methods for matrices with unit diagonal.
	
2013/04/20: Fix add-by-one for unit triangular matrices.
	
2013/03/31: Implement CLONE method for vectors, maps and preconditioners.
	    Make base_prec abstract.      
	
2013/03/13: doxygen docs for base_vect. Fix afmt to be len=* in genpde.	
	
2013/03/01: Changes in method naming scheme for matrices. 
	    Change name of descriptor module.
	
2012/12/11: Various fixes for 8-bytes integers.
	
2012/12/04: Rename specifics for GLOB_TO_LOC/LOC_TO_GLOB. Parametrize type
	    identifiers for MPI calls.
	
2012/11/26: Infinite loop bug in sparse AXPBY.
	
2012/10/24: Split serial_mod to improve build time. 	
	
2012/07/12: Cleanup Krylov routines. 	
	
2012/06/26: Fixed bug in prec%apply with 'C', and usage of rotations in
	    GMRES. 	
2012/06/08: Fix silly bug in GPS renumbering.
	
2012/05/25: Fixed docs for release 3.0
	
2012/05/21: Fix configure script to work around configure failure on Cray.
	
2012/04/30: Change descriptor's move_alloc and free to work on
            uninitialized input.	
	
2012/04/15: New LOCAL argument to geins/spins. New LIDX argument to CDALL
            with VL to allow for user-specified local numbering. 
	
2012/04/05: Default implementation of MV_TO_COO and MV_FROM_COO based on
            CP. 

2012/03/01: Make ISO_C_BINDING a prerequisite. 
	
2012/02/21: Added experimental support for 8-bytes integers.
	    Refactored the problem generation methods and the pargen 
	    sample programs.
	
2012/02/15: Fixed major perf problem with genblock. 
	
2012/01/30: Reworked norms 1 and infty, added sparse mat norm1.

2012/01/10: Bunch of fixes and configury improvements from Cray FTN	

2012/01/03: Split preconditioners into interface/implementation. 	
	
2011/11/27: Merged may routines from preprocessing project psblas-testpre.
	
2011/11/21: Added test for ISO_C_BINDING and AMD renumbering.
	
2011/11/19: Added the scratch option to the vect ASB routine. 
	
2011/11/11: Makefile fixes allowing for parallel make. 	

2011/10/25: Major upgrade defining the encapsulated vector types,
            providing further support for GPU.
	
2011/10/05: Split preconditioner modules to alleviate memory pressure
	    on the compiler, esp. XLF. 
	    Fixed bug in glist map. 
	
2011/08/01: MOLD methods and various fixes for NAG configry.
	
2011/07/25: Bunch of fixes for problems uncovered by Cray FTN.	

2011/06/15: Changed get_local_rows and friends 	into methods.

	
2011/03/25: Added version identification constants.
	
2011/03/10: Added support for sparse dot products. Changed intent of X in 
	    preconditioner apply to allow for GPU extensions.

2011/02/27: Reworked PRINT methods, for vectors as well. 	
	
2011/02/11: Changes to accommodate Cray compiler. 
	
2011/01/07: Silly bugs in spgather MPI data types and in z_nubmm calling
	    cnumbmm. Also, don't use allocate on assignment with GNU. 

2011/01/02: Finish descriptor reform by eliminating matrix_data. Switch 
	    all f03 extensions into f90. 

2010/12/16: Merge new descriptors with CLASS(PSB_INDX_MAP) internal maps. 
	    Updated various descriptor-related routines.
	
2010/11/29: opt subdir containing ELL and RSB. test/newfmt. 

2010/11/22: PRECBLD now takes a MOLD argument for its matrices. 
 	
2010/10/26: Fixed configure to use MPI wrappers. Fixed example in CXX: the
	    MOLD actual argument should be polymorphic.
	
2010/09/02: Fixed inheritance hierarchy of MOLD method. Merged into trunk.	
	
2010/09/01: Changed Makefiles to allow for multiple submakes.	
	
2010/08/31: Defined the MOLD method. Put under IFDEF in opposition to 
	    MOLD= in allocation of CLASS variables. 
	
2010/07/29: Make the aux component of base_mat a static array; works 
	    around a problem with gfortran. The library does not fully
            work yet under gfortran.
2010/05/10: Fixed fakempi. Now works under XLF 13.1
	
2010/04/29: Restructure KRYLOV modules. 
	
2010/04/29: Take out BLACS.
	
2010/04/27: Reworked inheritance chain for PREC.
	
2010/04/27: Fixed private attribute. Various fixes for compilation
            with gfortran. 
	
2010/04/21: Added shortcut for CSR in ILU_FACT 
	
2010/03/23: Restructured the module structure. 
	
	
2009/12/15: Tons of bug fixes, also from testing on IBM XLF. 
	
2009/09/15: First working OO implementation for serial routines on sparse
	    matrix data structures. Only D for the time being. 
	
2009/08/25: New configure flag 
	    --enable-serial
	    for serial-only  compilation. 	
2009/06/24: Changed order of arguments in sp_scal to make it uniform with 
	    rest of library.
2009/05/15: Changed interface to matdist.	
2009/05/12: Added support for NAG Fortran compiler	
2009/03/16: Release 2.3.1
	
2009/01/27: Renamed psb_transfer into psb_move_alloc. 	
2009/01/08: Require GNU Fortran 4.3 or later.	
2008/11/04: Repackaged and streamlined linear maps. 
	
2008/10/16: Fixed internal structure of psb_inter_desc. 	
	
2008/09/23: Fix borderline cases where one process does not own any 
	    indices from the global space.
	
2008/09/18: Defined psb_sizeof to be integer(8). Added support
	    into psb_sum, psb_amx and other reductions for long int
	    scalars. 
	
2008/09/16: Implemented new scheme for index conversion.
	    Changed cdall with an option to suppress global checks. 
	
2008/09/02: Improved psi_fnd_owner performace.
	
2008/09/01: Better timings in the pargen test cases.

2008/08/28: Changed CDALL in case of VL to handle overlapped indices. 	
	
2008/07/28: New sorting/reordering modules.	
	
2008/07/24: Addded HTML version of user's guide.	
	
2008/07/22: Fixed I/O for Harwell-Boeing and Matrix Market examples
	
2008/05/27: Merged single precision branch.
	
2008/04/28: Fixed trimming space in sparse matrix conversion.
	    Fixed performance issue in cdins.
	
2008/03/25: Fix performance bug in psi_idx_ins_cnv. Changed names of 
            some internal components of preconditioner data structure.

2008/03/27: Merged the experimental branch for implementing the AVL tree
            data structure in Fortran instead of relying on C and passing
	    functions around to perform comparisons. There seems to be
	    some performance advantage, although not very large.
	
2008/03/25: Merged in changes from the 2.2-maint branch re: error
	    messages, performance bug in psi_idx_ins_cnv.
	
2008/02/26: New psb_linmap_init, psb_linmap_ins, psb_linmap_asb for a
	    general linear operator mapping among index spaces.
	
2008/02/18: Branched off for  Version 2.2

2008/02/08: Merged changes from intermesh branch: we now have an
	    inter_desc_type object. Currently we only implement the
	    version needed for aggregation algorithms in the algebraic
	    multigrid preconditioners, but we'll define more general
	    (linear) maps soon enough. 

2008/01/25: Various changes to variables controlling conditional
	    compilation on the Fortran side: removed NETLIB_BLACS, now
	    HAVE_METIS HAVE_ESSL_BLACS HAVE_KSENDID.
	    Files impacted: Make.inc.XXX, base/modules/psb_penv_mod,
	    util/psb_metispart_mod
	
	
2008/01/18: Centralized convergence checks. Still partial for RGMRES. 	
	
2008/01/14: Merged changes for handling of transpose vs. overlap.
	
2008/01/10: Changed name of GMRESR into RGMRES for consistency.
	
2007/12/21: Merged in debug infrastructure, internal and html docs. 
	
2007/11/14: Fix INTENT(IN) on X vector in preconditioner routines.
	
2007/10/15: Repackaged the sorting routines in a submodule of their
	    own, adding some heap management and heapsort utilities for the
	    benefit of the multilevel preconditioners. 

2007/09/28: Moved gelp and csrp to serial. Changed interface to
    	    sphalo: the new one makes more sense.
            Updated documentation. 

2007/09/14: Second round of serial changes: merged into trunk, fixed
	    JAD regeneration and srch_upd now works.           

2007/09/10: First round of serial changes: implemented serial
	    psb_spcnv unifying multiple functionalities.

2007/09/04: Implemented RGMRES for complex data.

2007/06/04: Fixed implementation of fctint and coins: assume size
	    arrays caused troubles on some compilers. Documentation of
	    set_large_threshold. 

2007/05/22: Defined psb_precinit. 

2007/05/15: Defined psb_sizeof.

2007/05/15: Merged in various fixes coming from tests on SP5 and
	    HP-Itanium.	 

2007/04/08: Changed the implementation of psb_sp_getrow & friends.  

2007/03/27: Merged in changes for enabling compilation on SUN.

2007/02/22: Fixed various misalignments between real and complex.
	    Defined new psb_sp_clip routines.
	    Fixed psb_rwextd.
	    Changed the USE statements, minimizing size of modules and
	    maximizing consistency checks. 

2007/02/01: Merged serial version: we provide a minimal fake mpi to
	    allow compiling and running without mpi and blacs. Only
	    tested with gnu42 so far.

2007/01/23: Defined new field ext_index in desc_type, and
	    fixed long standing inconsistency in usage of overlap for
	    AS preconditioners. Modified halo to accept selector for
	    halo_index vs. ext_index.

2007/01/11: Migrated repository to SVN. 

2007/01/11: MLD2P4 has been moved to the new org. Now tackling the 
            test dirs.

2007/01/09: First try at reorganizing directories. Subdir MLD2P4 still
	    to be fixed. Documentation still to be updated. 

2006/12/11: Documented options in glob_to_loc.

2006/12/06: Fixed raw aggregation.

2006/12/05: Taken out extra interfaces; inserted use modules with ONLY
	    clauses where appropriate.

2006/11/30: Fixed a bug in raw aggregation. Note: raw aggregation
	    gives different results from smoothed with omega=0.0,
	    because in the latter we have explicitly stored zero
	    coefficients that would be absent in the first, thus
	    generating different ILU factorizations.

2006/11/28: Merged the mods for descriptors of large index spaces to
	    avoid having the GLOB_TO_LOC array. Took the chance to
	    reorganize the descriptor build routines and define some
	    access functions for descriptor features and entries, so
	    as not to use the descriptor components directly. Tested
	    with AS, 2- and 3- level Post smoothers. 

2006/11/09: The allocatable version works, but under gcc42 there is a
	    compiler bug when using -fbounds-check. 

2006/11/08: Merged the allocatable version; hope everything works!

2006/11/08: Branched version psblas2-2-0-maint, and defined tag
	    2.0.2.6 

2006/11/02: Done in the allocatable branch: repackaging of cdasb and
	    friends, taking out AVL trees where they were not
	    absolutely needed, and new dcsrmv routine. 

2006/11/01: Merged changes in the handling of data exchange.

2006/10/03: Merged in the multilevel preconditioner stuff. This is
	    still experimental, especially the interfaces are not
	    stable yet. 

2006/10/03: Declared version 2.0.2.5 for reference purposes.

2006/10/03: Fixed a bunch of minor bugs, incuding the sorting routines
	    imsr  and imsrx. Added a default call to blacs_exit inside
	    psb_exit fixed a bad termination in test/pargen/ppde90.f90

2006/09/02: Declared version 2.0.2, after having fixed a lot of
	    details in the environment routines.

2006/07/25: Defined a new psb_wtime function. Modified precset to
	    have a non-optional INFO dummy argument.

2006/07/06: Fixed bug in swaptran. Added psb_krylov generic interface.

2006/07/04: Ooops, the GetRow mod in SMMP is a performance hit.
	    Need to investigate further. 

2006/06/21: Bug fix in hb_read when dealing with symmetric matrices. 

2006/06/20: Rewritten symbmm and numbmm from SMMP to be intependent of
	    CSR  storage by using GetRow. Still need to test for
	    performance. 

2006/06/16: Defined GetRow. This way we may close the mat objects.
	    Next we will rewrite SMMP to only make use of GetRow,
	    not to rely on CSR storage format. 

2006/05/29: Added BLACS-like routines for data communication,
	    broadcasts, reductions, send/receive.

2006/05/25: Added environment management routines.

2006/05/03: Bug fixes, plus some change in the internals for SPINS,
	    preparing hooks for insertion with local numbering.

2006/04/24: Minor changes to the interface of dense tools routines,
	    trying to achieve a uniform look & feel.
	    Rewritten documentation; it is now reasonable, though not
	    perfect, except for the preconditioner routines. 
	    We can now declare RC3. 

2006/04/21: A bunch of fixes related to various matrix initialization 
	    problems that were revealed while testing on SP5.         

2006/04/18: Changed interface to spasb and csdp: better handling of 
	    regeneration. To be tested further for sophisticated uses.

2006/03/31: We declare RC2 now. Improved I/O routines in test/Fileread.

2006/03/24: We have a complex version now, working (not necessarily bug free). 

2006/03/15: Started move to complex version.  

2006/03/01: Complete restructure of PREC section. 

2006/02/01: New naming scheme.

2006/01/01: New multilevel preconditioning wih smoothed aggregation.

2005/09   : Now enabled UMFPACK complete factorization as basis for AS. 

2005/05/04: Now enabled SuperLU complete factorization as basis for AS. 

2005/04/29: First version with decoupled 2-level.

2005/04/06: Started work on decoupling the preconditioner aggregation
	    for 2-level from the main factorization. 

2005/03/30: First version of new DSC/SP allocate/insert/assembly
	    routines.  
2005/03/17: First version of RGMRES. To be refined. 

2005/03/08: dSwapTran aligned with dSwapData. Taken out SwapOverlap.
	    also moved onto iSwapX.

2005/03/07: dSwapData rewritten to achieve: 1. better performance;
	    2. more flexible functionality. It is now possible to
	    avoid SwapOvrlap entirely, relying on just SwapData.
	    SwapTran is still alive, since it reads the descriptors in
	    "transpose" mode. Also, added work areas to preconditioner
	    routine, to avoid excessive allocation in the halo/overlap
	    exchange.

2005/03/04: Had to put in a workaround for a gfortran bug:
	    tolower/toupper cannot be functions. 

2005/02/09: Explicit storage choice for the smoother. This seems
            to be changing a little bit the actual preconditioner. 
	    To be evaluated further.

2005/02/08: Renamed F90_PSPREC to PSB_PRCAPLY and Preconditioner to   
	    PSB_PRCBLD. Changed the way PRCAPLY decides what to do.
	    Still needs a PSB_PRCSET to be called before PRCBLD.

2005/01/28: Started moving functionalities to a SERIAL F90 layer. Also
	    defined a new COMM layer, to enable implementing SPMM
	    directly in F90.

2005/01/20: Finally taken out a direct call to the F77 DCSDP from
	    SPASB. 

2005/01/18: After much work, we now have 2-level Additive Schwarz
	    prototype implemented and working. We now start a major
	    code cleanup that will take some time. Mainly we want to
	    move a lot of the serial F77 functionality into  a new F95
	    serial layer, to simplify the parallel F95 code. 

2004/11/25: Following the introduction of Additive Shwarz and
	    variants, we have now renamed DECOMP_ and friends as
	    DESC_; this makes things more readable. Sooner or later
	    we're going to merge this into mainline, but this version
	    is still very much in a state of flux.

2004/07/18: For use with gfortran we need to declare the pointer
	    components  with NULL() initialization. This rules out
	    VAST and PGI.

2004/07/15: First development version with gfortran from the current 
	    snapshot of gcc 3.5.0. 
	    It is now possible in PSI_dSwapData to opt for
	    SEND|RECEIVE|SYNC data exchange; plan is to extend to all
	    data exchange functions, plus making it available as an
	    option from the F90 level.
  
2004/07/06: Merged in a lot of stuff coming mainly from the ASM
	    development; full merge will have to wait  a little more.
	    Among other things:
	    use of psimod
	    new choice parms for overlap
	    new data exchange for swapdata, to be extended.
	    multicolumn CSMM.
	    use psrealloc
	    new format for marking a matrix as suitable for update. 
	    

2003/12/09: Changed DSALLOC and DSASB to make sure whenever a dense
	    matrix is allocated it is also zeroed out. 

2003/10/13: Added call to BLACS_SET in the solvers to ensure global
	    heterogeneous coherence in the combine operations.

2003/09/30: Added LOC_TO_GLOB and GLOB_TO_LOC support routines. 

2003/09/30: Changed interface for smart update capabilities: choose
	    with optional parameters in ASB routines. 

2003/09/16: IFC 7.0 had a strange behaviour in the test programs:
	    sometimes the declaration of PARTS dummy argument with an
	    INTERFACE would not work, requiring an EXTERNAL
	    declaration. The proper INTERFACE works now with 7.1.

2003/03/10: Halo data exchange in F90_PSHALO can now be applied to
	    integer data; create appropriate support routines. 

2002/12/05: Initial version of Fileread sample programs.

2002/11/19: Fixes for JAD preconditioner.

2002/11/19: Methods for patterns: create a  descriptor without a
	    matrix. 

2001/11/16: Reviewed the interfaces: in the tools section we really
	    need the POINTER attribute for dense vectors, but not in
	    the computational routines; taking it  out allows more
	    flexibility. 

2001/09/16: Smart update capabilities.

2001/03/16: Renumbering routines.

2001/01/14: Added extensions to compute multiple DOTs and AMAXs at once;