diff --git a/base/tools/psb_cdins.f90 b/base/tools/psb_cdins.f90 index 6e154ddc..41e1002e 100644 --- a/base/tools/psb_cdins.f90 +++ b/base/tools/psb_cdins.f90 @@ -162,9 +162,9 @@ end subroutine psb_cdinsrc ! Arguments: ! nz - integer. The number of points to insert. ! ja(:) - integer The column indices of the points. -! desc - type(psb_desc_type). The communication descriptor +! desc - type(psb_desc_type). The communication descriptor ! info - integer. Return code. -! jla(:) - integer(psb_ipk_), optional The col indices in local numbering +! jla(:) - integer(psb_ipk_), optional The col indices in local numbering ! mask(:) - logical, optional, target ! subroutine psb_cdinsc(nz,ja,desc,info,jla,mask) diff --git a/docs/html/footnode.html b/docs/html/footnode.html index 1938ed88..13ed18b1 100644 --- a/docs/html/footnode.html +++ b/docs/html/footnode.html @@ -104,7 +104,7 @@ sample scatter/gather routines. . -
... follows... follows3
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Software version: 3.0-beta
-March 1, 2012. +April 16, 2012.
diff --git a/docs/html/node100.html b/docs/html/node100.html index c303ef61..83791957 100644 --- a/docs/html/node100.html +++ b/docs/html/node100.html @@ -94,7 +94,7 @@ explicitly.

-

+
Figure 9: The layout of a generic psb_foo @@ -108,7 +108,7 @@ The layout of a generic psb_foo --> \fbox{\TheSbox}
@@ -124,7 +124,7 @@ called by psb_spasb ... by process 0 (i.e. the root process).

-

+
Figure 10: A sample PSBLAS-2.0 error @@ -138,7 +138,7 @@ A sample PSBLAS-2.0 error --> \fbox{\TheSbox}
diff --git a/docs/html/node112.html b/docs/html/node112.html index 52d09be2..961c15a0 100644 --- a/docs/html/node112.html +++ b/docs/html/node112.html @@ -104,9 +104,9 @@ Error code: if no error, 0 is returned. Legal inputs to this subroutine are interpreted depending on the $ptype$ string as follows3: + HREF="footnode.html#foot7086">3:
NONE
No preconditioning, i.e. the preconditioner is just a copy @@ -129,7 +129,7 @@ Legal inputs to this subroutine are interpreted depending on the by the data allocation boundaries for each process; requires no communication. Only the incomplete factorization $ILU(0)$ is currently implemented.
diff --git a/docs/html/node117.html b/docs/html/node117.html index 6446a4b9..f220bef5 100644 --- a/docs/html/node117.html +++ b/docs/html/node117.html @@ -73,7 +73,7 @@ err = \frac{\|r_i\|}{(\|A\|\|x_i\|+\|b\|)} < eps \begin{displaymath}err = \frac{\Vert r_i\Vert}{(\Vert A\Vert\Vert x_i\Vert+\Vert b\Vert)} < eps \end{displaymath}

@@ -89,7 +89,7 @@ err = \frac{\|r_i\|}{\|b\|_2} < eps \begin{displaymath}err = \frac{\Vert r_i\Vert}{\Vert b\Vert _2} < eps \end{displaymath}

@@ -97,11 +97,11 @@ err = \frac{\|r_i\|}{\|b\|_2} < eps according to the value passed through the istop argument (see later). In the above formulae, $x_i$ is the tentative solution and $r_i=b-Ax_i$ the corresponding residual at the in.
Default: $itmax = 1000$.
Specified as: an integer variable $itmax \ge 1$.
itrace
If $>0$ print out an informational message about convergence every $itrace$ iterations.
Scope: global @@ -268,7 +268,7 @@ Intent: in.
Values: $irst>0$. This is employed for the BiCGSTABL or RGMRES methods, otherwise it is ignored. @@ -329,7 +329,7 @@ Returned as: a real number. ALT="$A$">; only available with the $CG$ method.
Scope: global diff --git a/docs/html/node119.html b/docs/html/node119.html index 266fa39c..7060aa2f 100644 --- a/docs/html/node119.html +++ b/docs/html/node119.html @@ -63,7 +63,7 @@ Mathematics Department, Macquarie University, Sydney. The command line arguments were:
latex2html -local_icons -noaddress -dir ../../html userhtml.tex

-The translation was initiated by Salvatore Filippone on 2012-03-26 +The translation was initiated by Salvatore Filippone on 2012-04-16

diff --git a/docs/html/node56.html b/docs/html/node56.html index 73cf1b26..245d166d 100644 --- a/docs/html/node56.html +++ b/docs/html/node56.html @@ -59,7 +59,7 @@ psb_cdall -- Allocates a communication descriptor 
 call psb_cdall(icontxt, desc_a, info,mg=mg,parts=parts)
 call psb_cdall(icontxt, desc_a, info,vg=vg,[mg=mg,flag=flag])
-call psb_cdall(icontxt, desc_a, info,vl=vl,[nl=nl,globalcheck=.true.])
+call psb_cdall(icontxt, desc_a, info,vl=vl,[nl=nl,globalcheck=.true.,lidx=lidx])
 call psb_cdall(icontxt, desc_a, info,nl=nl)
 call psb_cdall(icontxt, desc_a, info,mg=mg,repl=.true.)
@@ -181,8 +181,8 @@ Specified as: an integer value. May be specified together with vl.
repl
-
Data allocation: build a replicated index space (i.e. all - processes own all indices). +
Data allocation: build a replicated index space + (i.e. all processes own all indices).
Scope:global.
@@ -204,6 +204,24 @@ Intent: in.
Specified as: a logical value, default: .true.
+
lidx
+
Data allocation: the set of local indices + $lidx(1:nl)$ to be assigned to the global indices $vl$. +
+Scope:local. +
+Type:optional. +
+Intent: in. +
+Specified as: an integer array. +

@@ -286,10 +304,10 @@ An integer value; 0 means no error has been detected. --> $0\le pv(i) < np$; if $nv>1$ we have an index assigned to multiple processes, i.e. we have an overlap among the subdomains. @@ -312,15 +330,15 @@ An integer value; 0 means no error has been detected. The vector vg must be identical on all calling processes; its entries may have the ranges $(0\dots np-1)$ or $(1\dots np)$ according to the value of flag. The size $mg$ may be specified via the optional argument mg; the default is to use the entire vector vg, thus having mg=size(vg). @@ -330,33 +348,37 @@ An integer value; 0 means no error has been detected. vl(1:nl) assigned to the current process; thus, the global problem size $mg$ is given by the range of the aggregate of the individual vectors vl specified in the calling processes. The size may be specified via the optional - argument nl; the default is to use the entire vector vl, thus having - nl=size(vl). + argument nl; the default is to use the entire vector + vl, thus having nl=size(vl). If globalcheck=.true. the subroutine will check how many times each entry in the global index space $(1\dots mg)$ is specified in the input lists vl, thus allowing for the presence of overlap in the input, and checking for ``orphan'' indices. If globalcheck=.false., the subroutine will not check for overlap, and may be significantly faster, but the user is implicitly guaranteeing that there are neither orphan nor - overlap indices. + overlap indices. The optional argument lidx is available for + those cases in which the user has already established a + global-to-local mapping; if it is specified, each index in + vl(i) will be mapped to the corresponding local index + lidx(i).

nl
If this argument is specified alone (i.e. without vl) the result is a generalized row-block distribution in which each process $I$ gets assigned a consecutive chunk of $N_I=nl$ global indices.
diff --git a/docs/html/node57.html b/docs/html/node57.html index eb063ef0..948a2653 100644 --- a/docs/html/node57.html +++ b/docs/html/node57.html @@ -96,7 +96,7 @@ Intent: in.
Specified as: an integer array of length $nz$.
ja
@@ -110,7 +110,7 @@ Intent: in.
Specified as: an integer array of length $nz$. @@ -153,6 +153,13 @@ An integer value; 0 means no error has been detected. insist on the current process, i.e. edges for which neither the starting nor the end vertex belong to the current process. +
  • There exists another interface for this routine +
    +call psb_cdins(nz, ja, desc_a, info)
+
    +which will digest all entries in ja and add them to the +communication requirements. +

    • diff --git a/docs/html/node61.html b/docs/html/node61.html index 74964b3c..96bbcfe6 100644 --- a/docs/html/node61.html +++ b/docs/html/node61.html @@ -104,7 +104,7 @@ Intent: in.
    Specified as: an integer value $nl\ge 0$.

    extype
    diff --git a/docs/html/node62.html b/docs/html/node62.html index 4d90b69c..760860c2 100644 --- a/docs/html/node62.html +++ b/docs/html/node62.html @@ -131,7 +131,7 @@ An integer value; 0 means no error has been detected.
  • Providing a good estimate for the number of nonzeroes $nnz$ in the assembled matrix may substantially improve performance in the matrix build phase, as it will reduce or eliminate the need for diff --git a/docs/html/node63.html b/docs/html/node63.html index b9439c93..b5987033 100644 --- a/docs/html/node63.html +++ b/docs/html/node63.html @@ -58,7 +58,7 @@ psb_spins -- Insert a cloud of elements into a sparse 

    -call psb_spins(nz, ia, ja, val, a, desc_a, info)
+call psb_spins(nz, ia, ja, val, a, desc_a, info [,local])

    @@ -91,7 +91,7 @@ Intent: in.
    Specified as: an integer array of size $nz$.

    ja
    @@ -105,7 +105,7 @@ Intent: in.
    Specified as: an integer array of size $nz$.
    val
    @@ -119,11 +119,11 @@ Intent: in.
    Specified as: an array of size $nz$. Must be of the same type and kind of the aspk component of the sparse matrix $a$.
    desc_a
    @@ -137,6 +137,18 @@ Intent: inout.
    Specified as: a variable of type descdatapsb_desc_type.
    +
    local
    +
    Whether the entries in the indices vectors ia, + ja are already in local numbering. +
    +Scope:local. +
    +Type:optional. +
    +Specified as: a logical value; default: .false.. + +

    +

    diff --git a/docs/html/node67.html b/docs/html/node67.html index dda98aeb..39cfd4ec 100644 --- a/docs/html/node67.html +++ b/docs/html/node67.html @@ -90,7 +90,7 @@ Intent: in.
    Specified as: Integer scalar, default $1$. It is not a valid argument if in.
    Specified as: Integer scalar, default $1$. It is not a valid argument if 

    -call psb_geins(m, irw, val, x, desc_a, info,dupl)
+call psb_geins(m, irw, val, x, desc_a, info [,dupl,local])

    @@ -71,7 +71,7 @@ call psb_geins(m, irw, val, x, desc_a, info,dupl)

    m
    Number of rows in $val$ to be inserted.
    Scope:local. @@ -89,11 +89,11 @@ Specified as: an integer value. ALT="$i$"> of $val$ will be inserted into the local row corresponding to the global row index $irw(i)$. Scope:local.
    @@ -138,6 +138,18 @@ Intent: in. Specified as: integer, possible values: psb_dupl_ovwrt_, psb_dupl_add_.
    +
    local
    +
    Whether the entries in the index vector irw, + are already in local numbering. +
    +Scope:local. +
    +Type:optional. +
    +Specified as: a logical value; default: .false.. + +

    +

    diff --git a/docs/html/node71.html b/docs/html/node71.html index 44320d19..3137eea2 100644 --- a/docs/html/node71.html +++ b/docs/html/node71.html @@ -75,7 +75,7 @@ call psb_gelp(trans, iperm, x, info) SRC="img1.png" ALT="$A$"> or $A^T$.
    Scope: local @@ -89,7 +89,7 @@ Specified as: a single character with value 'N' for $A$ or 'T' for $A^T$.

    iperm
    diff --git a/docs/html/node80.html b/docs/html/node80.html index c331fa2a..7febbf48 100644 --- a/docs/html/node80.html +++ b/docs/html/node80.html @@ -80,7 +80,7 @@ Intent: in.
    Specified as: an integer $>0$.
    a
    @@ -116,7 +116,7 @@ Intent: in.
    Specified as: an integer $>0$. When append is true, specifies how many entries in the output vectors are already filled. @@ -131,10 +131,10 @@ Intent: in.
    Specified as: an integer $>0$, default: $row$.

    @@ -209,12 +209,12 @@ An integer value; 0 means no error has been detected.

    1. The output $nz$ is always the size of the output generated by the current call; thus, if append=.true., the total output size will be $nzin+nz$, with the newly extracted coefficients stored in entries nzin+1:nzin+nz of the array arguments;
      2. diff --git a/docs/html/node82.html b/docs/html/node82.html index 0271d082..23e45474 100644 --- a/docs/html/node82.html +++ b/docs/html/node82.html @@ -73,7 +73,7 @@ call psb_hsort(x,ix,dir,flag)

      These serial routines sort a sequence $X$ into ascending or descending order. The argument meaning is identical for the three calls; the only difference is the algorithm used to accomplish the @@ -99,7 +99,7 @@ Type:optional.
      Specified as: an integer array of (at least) the same size as $X$.

      dir
      @@ -123,7 +123,7 @@ default psb_lsort_up_.
      flag
      Whether to keep the original values in $IX$.
      Type:optional. @@ -185,10 +185,10 @@ position as the corresponding entries in $flag = psb\_sort\_ovw\_idx\_$ then the entries in $ix(1:n)$ where $ix(i) \leftarrow i$; thus, upon return from the subroutine, for each index ; thus, upon return from the subroutine, for each SRC="img4.png" ALT="$i$"> we have in $ix(i)$ the position that the item $x(i)$ occupied in the original data sequence; @@ -222,16 +222,16 @@ i$">; thus, upon return from the subroutine, for each --> $flag = psb\_sort\_keep\_idx\_$ the routine will assume that the entries in $ix(:)$ have already been initialized by the user;
    2. The three sorting algorithms have a similar $O(n \log n)$ expected running time; in the average case quicksort will be the fastest and merge-sort the slowest. However note that: @@ -239,7 +239,7 @@ i$">; thus, upon return from the subroutine, for each
      1. The worst case running time for quicksort is $O(n^2)$; the algorithm implemented here follows the well-known median-of-three heuristics, but the worst case may still apply; @@ -247,7 +247,7 @@ i$">; thus, upon return from the subroutine, for each
      2. The worst case running time for merge-sort and heap-sort is $O(n \log n)$ as the average case;
      3. The merge-sort algorithm is implemented to take advantage of diff --git a/docs/html/node84.html b/docs/html/node84.html index 0911e495..30f6b215 100644 --- a/docs/html/node84.html +++ b/docs/html/node84.html @@ -107,7 +107,7 @@ Intent: in.
        Specified as: an integer array. Default: use the indices $(0\dots np-1)$.
      3. @@ -141,7 +141,7 @@ Specified as: an integer variable.
    3. It is an error to specify a value for $np$ greater than the number of processes available in the underlying base parallel environment. diff --git a/docs/html/node85.html b/docs/html/node85.html index 0d0e02ed..67c9f955 100644 --- a/docs/html/node85.html +++ b/docs/html/node85.html @@ -104,7 +104,7 @@ Specified as: an integer value. $-1 \le iam \le np-1$
      np
      Number of processes in the PSBLAS virtual parallel machine. @@ -128,14 +128,14 @@ Specified as: an integer variable.
      --> $0 \le iam \le np-1$;
    4. If the user has requested on psb_init a number of processes less than the total available in the parallel execution environment, the remaining processes will have on return $iam=-1$; the only call involving icontxt that any such process may execute is to psb_exit. diff --git a/docs/html/node86.html b/docs/html/node86.html index 60664010..b9475530 100644 --- a/docs/html/node86.html +++ b/docs/html/node86.html @@ -103,7 +103,7 @@ Specified as: a logical variable, default value: true.
    5. This routine may be called even if a previous call to psb_info has returned with $iam=-1$; indeed, it it is the only routine that may be called with argument icontxt in this situation. diff --git a/docs/html/node88.html b/docs/html/node88.html index 04502929..8b9a7cd6 100644 --- a/docs/html/node88.html +++ b/docs/html/node88.html @@ -63,7 +63,7 @@ call psb_get_rank(rank, icontxt, id)

      This subroutine returns the MPI rank of the PSBLAS process $id$

      Type:
      @@ -98,7 +98,7 @@ Specified as: an integer value. $0 \le id \le np-1$
      @@ -110,7 +110,7 @@ Specified as: an integer value. $0<= root <= np-1$, default 0 diff --git a/docs/html/node93.html b/docs/html/node93.html index 4facf83f..3d90ef31 100644 --- a/docs/html/node93.html +++ b/docs/html/node93.html @@ -112,7 +112,7 @@ Specified as: an integer value $-1<= root <= np-1$, default -1. diff --git a/docs/html/node94.html b/docs/html/node94.html index 7b048c42..25821a98 100644 --- a/docs/html/node94.html +++ b/docs/html/node94.html @@ -112,7 +112,7 @@ Specified as: an integer value $-1<= root <= np-1$, default -1.
      diff --git a/docs/html/node95.html b/docs/html/node95.html index 59c81507..d0f84582 100644 --- a/docs/html/node95.html +++ b/docs/html/node95.html @@ -112,7 +112,7 @@ Specified as: an integer value $-1<= root <= np-1$, default -1.
      diff --git a/docs/html/node96.html b/docs/html/node96.html index 3ef4a847..05bf1c34 100644 --- a/docs/html/node96.html +++ b/docs/html/node96.html @@ -112,7 +112,7 @@ Specified as: an integer value $-1<= root <= np-1$, default -1.
      diff --git a/docs/html/node97.html b/docs/html/node97.html index e85fe415..f2a8a1ab 100644 --- a/docs/html/node97.html +++ b/docs/html/node97.html @@ -112,7 +112,7 @@ Specified as: an integer value $-1<= root <= np-1$, default -1.
      diff --git a/docs/html/node98.html b/docs/html/node98.html index b8f4bc4c..af1d8104 100644 --- a/docs/html/node98.html +++ b/docs/html/node98.html @@ -93,7 +93,7 @@ Intent: in. Specified as: an integer, real or complex variable, which may be a scalar, or a rank 1 or 2 array, or a character or logical scalar. Type, kind and rank must agree on sender and receiver process; if $m$ is not specified, size must agree as well. @@ -111,7 +111,7 @@ Specified as: an integer value $0<= dst <= np-1$.
      m
      @@ -128,16 +128,16 @@ Specified as: an integer value $0<= m <= size(dat,1)$.
      When $dat$ is a rank 2 array, specifies the number of rows to be sent independently of the leading dimension $size(dat,1)$; must have the same value on sending and receiving processes. @@ -157,7 +157,7 @@ same value on sending and receiving processes.
    6. This subroutine implies a synchronization, but only between the calling process and the destination process $dst$.
    diff --git a/docs/html/node99.html b/docs/html/node99.html index ccc21c0d..6a9983fa 100644 --- a/docs/html/node99.html +++ b/docs/html/node99.html @@ -94,7 +94,7 @@ Specified as: an integer value $0<= src <= np-1$.
    m
    @@ -111,16 +111,16 @@ Specified as: an integer value $0<= m <= size(dat,1)$.
    When $dat$ is a rank 2 array, specifies the number of rows to be sent independently of the leading dimension $size(dat,1)$; must have the same value on sending and receiving processes. @@ -143,7 +143,7 @@ Intent: inout. Specified as: an integer, real or complex variable, which may be a scalar, or a rank 1 or 2 array, or a character or logical scalar. Type, kind and rank must agree on sender and receiver process; if $m$ is not specified, size must agree as well. @@ -156,7 +156,7 @@ not specified, size must agree as well.
  • This subroutine implies a synchronization, but only between the calling process and the source process $src$.
    • diff --git a/docs/html/userhtml.html b/docs/html/userhtml.html index 4b2bde38..a3f23fda 100644 --- a/docs/html/userhtml.html +++ b/docs/html/userhtml.html @@ -58,7 +58,7 @@ University of Rome ``Tor Vergata'', Italy
    Software version: 3.0-beta
    -March 1, 2012. +April 16, 2012.
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+0000959825 00000 n +0000959952 00000 n +0000960064 00000 n +0000960182 00000 n +0000960296 00000 n +0000960376 00000 n +0000960416 00000 n +0000960653 00000 n trailer << /Size 1690 /Root 1688 0 R /Info 1689 0 R -/ID [<3678ED6505A696EBA8EF9BCB410ABFB2> <3678ED6505A696EBA8EF9BCB410ABFB2>] >> +/ID [<94AEE02880956BFC6059356CDB53304A> <94AEE02880956BFC6059356CDB53304A>] >> startxref -959632 +961295 %%EOF diff --git a/docs/src/toolsrout.tex b/docs/src/toolsrout.tex index a7da7e55..01560f52 100644 --- a/docs/src/toolsrout.tex +++ b/docs/src/toolsrout.tex @@ -11,7 +11,7 @@ \begin{verbatim} call psb_cdall(icontxt, desc_a, info,mg=mg,parts=parts) call psb_cdall(icontxt, desc_a, info,vg=vg,[mg=mg,flag=flag]) -call psb_cdall(icontxt, desc_a, info,vl=vl,[nl=nl,globalcheck=.true.]) +call psb_cdall(icontxt, desc_a, info,vl=vl,[nl=nl,globalcheck=.true.,lidx=lidx]) call psb_cdall(icontxt, desc_a, info,nl=nl) call psb_cdall(icontxt, desc_a, info,mg=mg,repl=.true.) \end{verbatim} @@ -76,6 +76,12 @@ Scope:{\bf global}.\\ Type:{\bf optional}.\\ Intent: {\bf in}.\\ Specified as: a logical value, default: \verb|.true.| +\item[lidx] Data allocation: the set of local indices + $lidx(1:nl)$ to be assigned to the global indices $vl$. \\ +Scope:{\bf local}.\\ +Type:{\bf optional}.\\ +Intent: {\bf in}.\\ +Specified as: an integer array. \end{description} \begin{description} @@ -139,8 +145,8 @@ An integer value; 0 means no error has been detected. problem size $mg$ is given by the range of the aggregate of the individual vectors \verb|vl| specified in the calling processes. The size may be specified via the optional - argument \verb|nl|; the default is to use the entire vector \verb|vl|, thus having - \verb|nl=size(vl)|. + argument \verb|nl|; the default is to use the entire vector + \verb|vl|, thus having \verb|nl=size(vl)|. If \verb|globalcheck=.true.| the subroutine will check how many times each entry in the global index space $(1\dots mg)$ is specified in the input lists \verb|vl|, thus allowing for the @@ -148,7 +154,11 @@ An integer value; 0 means no error has been detected. indices. If \verb|globalcheck=.false.|, the subroutine will not check for overlap, and may be significantly faster, but the user is implicitly guaranteeing that there are neither orphan nor - overlap indices. + overlap indices. The optional argument \verb|lidx| is available for + those cases in which the user has already established a + global-to-local mapping; if it is specified, each index in + \verb|vl(i)| will be mapped to the corresponding local index + \verb|lidx(i)|. \item[nl] If this argument is specified alone (i.e. without \verb|vl|) the result is a generalized row-block distribution in which each process $I$ gets assigned a consecutive chunk of $N_I=nl$ global diff --git a/docs/src/userguide.tex b/docs/src/userguide.tex index 6ea3d164..edb5473d 100644 --- a/docs/src/userguide.tex +++ b/docs/src/userguide.tex @@ -103,7 +103,7 @@ by Salvatore Filippone\\ and Alfredo Buttari}\\ University of Rome ``Tor Vergata''.\\[3ex] -March 1, 2012 +April 16, 2012 \end{minipage}} %\addtolength{\textwidth}{\centeroffset} diff --git a/docs/src/userhtml.tex b/docs/src/userhtml.tex index 49eb055e..b21848c7 100644 --- a/docs/src/userhtml.tex +++ b/docs/src/userhtml.tex @@ -88,7 +88,7 @@ %\today Software version: 3.0-beta\\ %\today -March 1, 2012. +April 16, 2012. \cleardoublepage \begingroup \renewcommand*{\thepage}{toc} diff --git a/test/pargen/runs/ppde.inp b/test/pargen/runs/ppde.inp index 550d52c6..9cc83f55 100644 --- a/test/pargen/runs/ppde.inp +++ b/test/pargen/runs/ppde.inp @@ -2,7 +2,7 @@ BICGSTAB Iterative method BICGSTAB CGS BICG BICGSTABL RGMRES BJAC Preconditioner NONE DIAG BJAC CSR Storage format for matrix A: CSR COO JAD -060 Domain size (acutal system is this**3) +008 Domain size (acutal system is this**3) 2 Stopping criterion 1000 MAXIT -2 ITRACE