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!> \namespace psb_base_mod \class psb_c_base_sparse_mat !! \extends psb_base_mod::psb_base_sparse_mat - !! This module contains the definition of the psb_c_base_sparse_mat - !! type, extending the psb_base_sparse_mat to define a middle - !! level complex(psb_spk_) sparse matrix object. + !! The psb_c_base_sparse_mat type, extending psb_base_sparse_mat, + !! defines a middle level complex(psb_spk_) sparse matrix object. !! This class object itself does not have any additional members !! with respect to those of the base class. No methods can be fully !! implemented at this level, but we can define the interface for the @@ -49,13 +48,6 @@ module psb_c_base_mat_mod !! field, such as the matrix-vector product; this interface is defined, !! but is supposed to be overridden at the leaf level. !! - !! This module also contains the definition of the - !! psb_c_coo_sparse_mat type and the related methods. This is the - !! reference type for all the format transitions, copies and mv unless - !! methods are implemented that allow the direct transition from one - !! format to another. It is defined here since all other classes must - !! refer to it per the MEDIATOR design pattern. - !! !! About the method MOLD: this has been defined for those compilers !! not yet supporting ALLOCATE( ...,MOLD=...); it's otherwise silly to !! duplicate "by hand" what is specified in the language (in this case F2008) @@ -123,10 +115,23 @@ module psb_c_base_mat_mod private :: c_base_cp_from, c_base_mv_from + !> \namespace psb_base_mod \class psb_c_base_sparse_mat + !! \extends psb_base_mod::psb_base_sparse_mat + !! + !! psb_c_coo_sparse_mat type and the related methods. This is the + !! reference type for all the format transitions, copies and mv unless + !! methods are implemented that allow the direct transition from one + !! format to another. It is defined here since all other classes must + !! refer to it per the MEDIATOR design pattern. + !! type, extends(psb_c_base_sparse_mat) :: psb_c_coo_sparse_mat - + !> Number of nonzeros. integer(psb_ipk_) :: nnz - integer(psb_ipk_), allocatable :: ia(:), ja(:) + !> Row indices. + integer(psb_ipk_), allocatable :: ia(:) + !> Column indices. + integer(psb_ipk_), allocatable :: ja(:) + !> Coefficient values. complex(psb_spk_), allocatable :: val(:) contains @@ -206,20 +211,40 @@ module psb_c_base_mat_mod ! ! == ================= - ! - ! CSPUT: Hand over a set of values to A. - ! Simple description: - ! A(IA(1:nz),JA(1:nz)) = VAL(1:NZ) - ! - ! Catches: - ! 1. If A is in the BUILD state, then this method - ! can only be called for COO matrice, in which case it - ! is more like queueing coefficients for later processing; - ! 2. If A is in the UPDATE state, then every derived class must - ! implement it; - ! 3. In the UPDATE state, depending on the value of DUPL flag - ! inside A, it will be A=VAL or A = A + VAL - ! + !> Function csput: + !! \brief Insert coefficients. + !! + !! + !! Given a list of NZ triples + !! (IA(i),JA(i),VAL(i)) + !! record a new coefficient in A such that + !! A(IA(1:nz),JA(1:nz)) = VAL(1:NZ). + !! + !! The internal components IA,JA,VAL are reallocated as necessary. + !! Constraints: + !! - If the matrix A is in the BUILD state, then the method will + !! only work for COO matrices, all other format will throw an error. + !! In this case coefficients are queued inside A for further processing. + !! - If the matrix A is in the UPDATE state, then it can be in any format; + !! the update operation will perform either + !! A(IA(1:nz),JA(1:nz)) = VAL(1:NZ) + !! or + !! A(IA(1:nz),JA(1:nz)) = A(IA(1:nz),JA(1:nz))+VAL(1:NZ) + !! according to the value of DUPLICATE. + !! - Coefficients with (IA(I),JA(I)) outside the ranges specified by + !! IMIN:IMAX,JMIN:JMAX will be ignored. + !! + !! \param nz number of triples in input + !! \param ia(:) the input row indices + !! \param ja(:) the input col indices + !! \param val(:) the input coefficients + !! \param imin minimum row index + !! \param imax maximum row index + !! \param jmin minimum col index + !! \param jmax maximum col index + !! \param info return code + !! \param gtl(:) [none] an array to renumber indices (iren(ia(:)),iren(ja(:)) + !! ! interface subroutine psb_c_base_csput(nz,ia,ja,val,a,imin,imax,jmin,jmax,info,gtl) @@ -233,27 +258,36 @@ module psb_c_base_mat_mod end interface ! - ! CSGET methods: getrow, getblk, clip. - ! getrow is the basic method, the other two are - ! basically convenient wrappers/shorthand. - ! - ! out(:) = A(imin:imax,:) - ! - ! The two methods differ on the output format - ! - ! GETROW returns as the set - ! NZ, IA(1:nz), JA(1:nz), VAL(1:NZ) ! - ! Optional arguments: - ! JMIN,JMAX: get A(IMIN:IMAX,JMIN:JMAX), - ! default 1:ncols - ! APPEND: append at the end of data, in which case - ! # used entries must be in NZ - ! RSCALE, CSCALE: scale output indices at base 1. + !> Function csgetrow: + !! \brief Get a (subset of) row(s) + !! + !! getrow is the basic method by which the other (getblk, clip) can + !! be implemented. + !! + !! Returns the set + !! NZ, IA(1:nz), JA(1:nz), VAL(1:NZ) + !! each identifying the position of a nonzero in A + !! between row indices IMIN:IMAX; + !! IA,JA are reallocated as necessary. + !! + !! \param imin the minimum row index we are interested in + !! \param imax the minimum row index we are interested in + !! \param nz the number of output coefficients + !! \param ia(:) the output row indices + !! \param ja(:) the output col indices + !! \param val(:) the output coefficients + !! \param info return code + !! \param jmin [1] minimum col index + !! \param jmax [a\%get_ncols()] maximum col index + !! \param iren(:) [none] an array to return renumbered indices (iren(ia(:)),iren(ja(:)) + !! \param rscale [false] map [min(ia(:)):max(ia(:))] onto [1:max(ia(:))-min(ia(:))+1] + !! \param cscale [false] map [min(ja(:)):max(ja(:))] onto [1:max(ja(:))-min(ja(:))+1] + !! ( iren cannot be specified with rscale/cscale) + !! \param append [false] append to ia,ja + !! \param nzin [none] if append, then first new entry should go in entry nzin+1 + !! ! - ! GETROW must be overridden by all data formats. - ! - interface subroutine psb_c_base_csgetrow(imin,imax,a,nz,ia,ja,val,info,& & jmin,jmax,iren,append,nzin,rscale,cscale) @@ -272,13 +306,25 @@ module psb_c_base_mat_mod end interface ! - ! CSGET methods: getrow, getblk. - ! out(:) = A(imin:imax,:) - ! - ! GETBLK returns a pbs_c_coo_sparse_mat with - ! the same contents. - ! Default implementation at base level - ! in terms of (derived) GETROW + !> Function csgetblk: + !! \brief Get a (subset of) row(s) + !! + !! getblk is very similar to getrow, except that the output + !! is packaged in a psb_c_coo_sparse_mat object + !! + !! \param imin the minimum row index we are interested in + !! \param imax the minimum row index we are interested in + !! \param b the output (sub)matrix + !! \param info return code + !! \param jmin [1] minimum col index + !! \param jmax [a\%get_ncols()] maximum col index + !! \param iren(:) [none] an array to return renumbered indices (iren(ia(:)),iren(ja(:)) + !! \param rscale [false] map [min(ia(:)):max(ia(:))] onto [1:max(ia(:))-min(ia(:))+1] + !! \param cscale [false] map [min(ja(:)):max(ja(:))] onto [1:max(ja(:))-min(ja(:))+1] + !! ( iren cannot be specified with rscale/cscale) + !! \param append [false] append to ia,ja + !! \param nzin [none] if append, then first new entry should go in entry nzin+1 + !! ! interface subroutine psb_c_base_csgetblk(imin,imax,a,b,info,& @@ -296,12 +342,26 @@ module psb_c_base_mat_mod end interface ! - ! CLIP: extract a subset - ! B(:,:) = A(imin:imax,jmin:jmax) - ! control: rscale,cscale as in getblk above. - ! - ! Default implementation at base level in terms of - ! GETBLK. + ! + !> Function csclip: + !! \brief Get a submatrix. + !! + !! csclip is practically identical to getblk. + !! One of them has to go away..... + !! + !! \param b the output submatrix + !! \param info return code + !! \param imin [1] the minimum row index we are interested in + !! \param imax [a%get_nrows()] the minimum row index we are interested in + !! \param jmin [1] minimum col index + !! \param jmax [a\%get_ncols()] maximum col index + !! \param iren(:) [none] an array to return renumbered indices (iren(ia(:)),iren(ja(:)) + !! \param rscale [false] map [min(ia(:)):max(ia(:))] onto [1:max(ia(:))-min(ia(:))+1] + !! \param cscale [false] map [min(ja(:)):max(ja(:))] onto [1:max(ja(:))-min(ja(:))+1] + !! ( iren cannot be specified with rscale/cscale) + !! \param append [false] append to ia,ja + !! \param nzin [none] if append, then first new entry should go in entry nzin+1 + !! ! interface subroutine psb_c_base_csclip(a,b,info,& @@ -316,9 +376,13 @@ module psb_c_base_mat_mod end interface ! - ! GET_DIAG method - ! - ! D(i) = A(i:i), i=1:min(nrows,ncols) + !> Function get_diag: + !! \brief Extract the diagonal of A. + !! + !! D(i) = A(i:i), i=1:min(nrows,ncols) + !! + !! \param d(:) The output diagonal + !! \param info return code. ! interface subroutine psb_c_base_get_diag(a,d,info) @@ -330,10 +394,13 @@ module psb_c_base_mat_mod end interface ! - ! MOLD: make B have the same dinamyc type - ! as A. - ! For compilers not supporting - ! allocate( mold= ) + !> Function mold: + !! \brief Allocate a class(psb_c_base_sparse_mat) with the + !! same dynamic type as the input. + !! This is equivalent to allocate( mold= ) and is provided + !! for those compilers not yet supporting mold. + !! \param b The output variable + !! \param info return code ! interface subroutine psb_c_base_mold(a,b,info) @@ -346,17 +413,12 @@ module psb_c_base_mat_mod ! - ! These are the methods implementing the MEDIATOR pattern - ! to allow switch between arbitrary. - ! Indeed, the TO/FROM FMT can be implemented at the base level - ! in terms of the TO/FROM COO per the MEDIATOR design pattern. - ! This does not prevent most of the derived classes to - ! provide their own versions with shortcuts. - ! A%{MV|CP}_{TO|FROM}_{FMT|COO} - ! MV|CP: copy versus move, i.e. deallocate - ! TO|FROM: invoked from source or target object - ! - ! + !> Function cp_to_coo: + !! \brief Copy and convert to psb_c_coo_sparse_mat + !! Invoked from the source object. + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_c_base_cp_to_coo(a,b,info) import :: psb_ipk_, psb_c_base_sparse_mat, psb_c_coo_sparse_mat, psb_spk_ @@ -366,6 +428,13 @@ module psb_c_base_mat_mod end subroutine psb_c_base_cp_to_coo end interface + ! + !> Function cp_from_coo: + !! \brief Copy and convert from psb_c_coo_sparse_mat + !! Invoked from the target object. + !! \param b The input variable + !! \param info return code + ! interface subroutine psb_c_base_cp_from_coo(a,b,info) import :: psb_ipk_, psb_c_base_sparse_mat, psb_c_coo_sparse_mat, psb_spk_ @@ -375,6 +444,14 @@ module psb_c_base_mat_mod end subroutine psb_c_base_cp_from_coo end interface + ! + !> Function cp_to_fmt: + !! \brief Copy and convert to a class(psb_c_base_sparse_mat) + !! Invoked from the source object. Can be implemented by + !! simply invoking a%cp_to_coo(tmp) and then b%cp_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_c_base_cp_to_fmt(a,b,info) import :: psb_ipk_, psb_c_base_sparse_mat, psb_spk_ @@ -384,6 +461,14 @@ module psb_c_base_mat_mod end subroutine psb_c_base_cp_to_fmt end interface + ! + !> Function cp_from_fmt: + !! \brief Copy and convert from a class(psb_c_base_sparse_mat) + !! Invoked from the target object. Can be implemented by + !! simply invoking b%cp_to_coo(tmp) and then a%cp_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_c_base_cp_from_fmt(a,b,info) import :: psb_ipk_, psb_c_base_sparse_mat, psb_spk_ @@ -393,6 +478,13 @@ module psb_c_base_mat_mod end subroutine psb_c_base_cp_from_fmt end interface + ! + !> Function mv_to_coo: + !! \brief Convert to psb_c_coo_sparse_mat, freeing the source. + !! Invoked from the source object. + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_c_base_mv_to_coo(a,b,info) import :: psb_ipk_, psb_c_base_sparse_mat, psb_c_coo_sparse_mat, psb_spk_ @@ -402,6 +494,13 @@ module psb_c_base_mat_mod end subroutine psb_c_base_mv_to_coo end interface + ! + !> Function mv_from_coo: + !! \brief Convert from psb_c_coo_sparse_mat, freeing the source. + !! Invoked from the target object. + !! \param b The input variable + !! \param info return code + ! interface subroutine psb_c_base_mv_from_coo(a,b,info) import :: psb_ipk_, psb_c_base_sparse_mat, psb_c_coo_sparse_mat, psb_spk_ @@ -411,6 +510,14 @@ module psb_c_base_mat_mod end subroutine psb_c_base_mv_from_coo end interface + ! + !> Function mv_to_fmt: + !! \brief Convert to a class(psb_c_base_sparse_mat), freeing the source. + !! Invoked from the source object. Can be implemented by + !! simply invoking a%mv_to_coo(tmp) and then b%mv_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_c_base_mv_to_fmt(a,b,info) import :: psb_ipk_, psb_c_base_sparse_mat, psb_spk_ @@ -420,6 +527,14 @@ module psb_c_base_mat_mod end subroutine psb_c_base_mv_to_fmt end interface + ! + !> Function mv_from_fmt: + !! \brief Convert from a class(psb_c_base_sparse_mat), freeing the source. + !! Invoked from the target object. Can be implemented by + !! simply invoking b%mv_to_coo(tmp) and then a%mv_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_c_base_mv_from_fmt(a,b,info) import :: psb_ipk_, psb_c_base_sparse_mat, psb_spk_ @@ -430,11 +545,13 @@ module psb_c_base_mat_mod end interface ! - ! Transpose methods. - ! You can always default to COO to do the actual - ! transpose work. - ! - interface + !> Function transp: + !! \brief Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! Copyout version + !! \param b The output variable + ! + interface subroutine psb_c_base_transp_2mat(a,b) import :: psb_ipk_, psb_c_base_sparse_mat, psb_base_sparse_mat, psb_spk_ class(psb_c_base_sparse_mat), intent(in) :: a @@ -442,6 +559,13 @@ module psb_c_base_mat_mod end subroutine psb_c_base_transp_2mat end interface + ! + !> Function transc: + !! \brief Conjugate Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! Copyout version. + !! \param b The output variable + ! interface subroutine psb_c_base_transc_2mat(a,b) import :: psb_ipk_, psb_c_base_sparse_mat, psb_base_sparse_mat, psb_spk_ @@ -450,6 +574,12 @@ module psb_c_base_mat_mod end subroutine psb_c_base_transc_2mat end interface + ! + !> Function transp: + !! \brief Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! In-place version. + ! interface subroutine psb_c_base_transp_1mat(a) import :: psb_ipk_, psb_c_base_sparse_mat, psb_spk_ @@ -457,6 +587,12 @@ module psb_c_base_mat_mod end subroutine psb_c_base_transp_1mat end interface + ! + !> Function transc: + !! \brief Conjugate Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! In-place version. + ! interface subroutine psb_c_base_transc_1mat(a) import :: psb_ipk_, psb_c_base_sparse_mat, psb_spk_ @@ -684,7 +820,11 @@ module psb_c_base_mat_mod ! COO interfaces ! ! == =============== - + + ! + !> + !! \see psb_base_mat_mod::psb_base_reallocate_nz + ! interface subroutine psb_c_coo_reallocate_nz(nz,a) import :: psb_ipk_, psb_c_coo_sparse_mat diff --git a/base/modules/psb_d_base_mat_mod.f90 b/base/modules/psb_d_base_mat_mod.f90 index d27103c2..83636d92 100644 --- a/base/modules/psb_d_base_mat_mod.f90 +++ b/base/modules/psb_d_base_mat_mod.f90 @@ -39,9 +39,8 @@ module psb_d_base_mat_mod !> \namespace psb_base_mod \class psb_d_base_sparse_mat !! \extends psb_base_mod::psb_base_sparse_mat - !! This module contains the definition of the psb_d_base_sparse_mat - !! type, extending the psb_base_sparse_mat to define a middle - !! level real(psb_dpk_) sparse matrix object. + !! The psb_d_base_sparse_mat type, extending psb_base_sparse_mat, + !! defines a middle level real(psb_dpk_) sparse matrix object. !! This class object itself does not have any additional members !! with respect to those of the base class. No methods can be fully !! implemented at this level, but we can define the interface for the @@ -49,13 +48,6 @@ module psb_d_base_mat_mod !! field, such as the matrix-vector product; this interface is defined, !! but is supposed to be overridden at the leaf level. !! - !! This module also contains the definition of the - !! psb_d_coo_sparse_mat type and the related methods. This is the - !! reference type for all the format transitions, copies and mv unless - !! methods are implemented that allow the direct transition from one - !! format to another. It is defined here since all other classes must - !! refer to it per the MEDIATOR design pattern. - !! !! About the method MOLD: this has been defined for those compilers !! not yet supporting ALLOCATE( ...,MOLD=...); it's otherwise silly to !! duplicate "by hand" what is specified in the language (in this case F2008) @@ -123,10 +115,23 @@ module psb_d_base_mat_mod private :: d_base_cp_from, d_base_mv_from + !> \namespace psb_base_mod \class psb_d_base_sparse_mat + !! \extends psb_base_mod::psb_base_sparse_mat + !! + !! psb_d_coo_sparse_mat type and the related methods. This is the + !! reference type for all the format transitions, copies and mv unless + !! methods are implemented that allow the direct transition from one + !! format to another. It is defined here since all other classes must + !! refer to it per the MEDIATOR design pattern. + !! type, extends(psb_d_base_sparse_mat) :: psb_d_coo_sparse_mat - + !> Number of nonzeros. integer(psb_ipk_) :: nnz - integer(psb_ipk_), allocatable :: ia(:), ja(:) + !> Row indices. + integer(psb_ipk_), allocatable :: ia(:) + !> Column indices. + integer(psb_ipk_), allocatable :: ja(:) + !> Coefficient values. real(psb_dpk_), allocatable :: val(:) contains @@ -206,20 +211,40 @@ module psb_d_base_mat_mod ! ! == ================= - ! - ! CSPUT: Hand over a set of values to A. - ! Simple description: - ! A(IA(1:nz),JA(1:nz)) = VAL(1:NZ) - ! - ! Catches: - ! 1. If A is in the BUILD state, then this method - ! can only be called for COO matrice, in which case it - ! is more like queueing coefficients for later processing; - ! 2. If A is in the UPDATE state, then every derived class must - ! implement it; - ! 3. In the UPDATE state, depending on the value of DUPL flag - ! inside A, it will be A=VAL or A = A + VAL - ! + !> Function csput: + !! \brief Insert coefficients. + !! + !! + !! Given a list of NZ triples + !! (IA(i),JA(i),VAL(i)) + !! record a new coefficient in A such that + !! A(IA(1:nz),JA(1:nz)) = VAL(1:NZ). + !! + !! The internal components IA,JA,VAL are reallocated as necessary. + !! Constraints: + !! - If the matrix A is in the BUILD state, then the method will + !! only work for COO matrices, all other format will throw an error. + !! In this case coefficients are queued inside A for further processing. + !! - If the matrix A is in the UPDATE state, then it can be in any format; + !! the update operation will perform either + !! A(IA(1:nz),JA(1:nz)) = VAL(1:NZ) + !! or + !! A(IA(1:nz),JA(1:nz)) = A(IA(1:nz),JA(1:nz))+VAL(1:NZ) + !! according to the value of DUPLICATE. + !! - Coefficients with (IA(I),JA(I)) outside the ranges specified by + !! IMIN:IMAX,JMIN:JMAX will be ignored. + !! + !! \param nz number of triples in input + !! \param ia(:) the input row indices + !! \param ja(:) the input col indices + !! \param val(:) the input coefficients + !! \param imin minimum row index + !! \param imax maximum row index + !! \param jmin minimum col index + !! \param jmax maximum col index + !! \param info return code + !! \param gtl(:) [none] an array to renumber indices (iren(ia(:)),iren(ja(:)) + !! ! interface subroutine psb_d_base_csput(nz,ia,ja,val,a,imin,imax,jmin,jmax,info,gtl) @@ -233,27 +258,36 @@ module psb_d_base_mat_mod end interface ! - ! CSGET methods: getrow, getblk, clip. - ! getrow is the basic method, the other two are - ! basically convenient wrappers/shorthand. - ! - ! out(:) = A(imin:imax,:) - ! - ! The two methods differ on the output format - ! - ! GETROW returns as the set - ! NZ, IA(1:nz), JA(1:nz), VAL(1:NZ) ! - ! Optional arguments: - ! JMIN,JMAX: get A(IMIN:IMAX,JMIN:JMAX), - ! default 1:ncols - ! APPEND: append at the end of data, in which case - ! # used entries must be in NZ - ! RSCALE, CSCALE: scale output indices at base 1. + !> Function csgetrow: + !! \brief Get a (subset of) row(s) + !! + !! getrow is the basic method by which the other (getblk, clip) can + !! be implemented. + !! + !! Returns the set + !! NZ, IA(1:nz), JA(1:nz), VAL(1:NZ) + !! each identifying the position of a nonzero in A + !! between row indices IMIN:IMAX; + !! IA,JA are reallocated as necessary. + !! + !! \param imin the minimum row index we are interested in + !! \param imax the minimum row index we are interested in + !! \param nz the number of output coefficients + !! \param ia(:) the output row indices + !! \param ja(:) the output col indices + !! \param val(:) the output coefficients + !! \param info return code + !! \param jmin [1] minimum col index + !! \param jmax [a\%get_ncols()] maximum col index + !! \param iren(:) [none] an array to return renumbered indices (iren(ia(:)),iren(ja(:)) + !! \param rscale [false] map [min(ia(:)):max(ia(:))] onto [1:max(ia(:))-min(ia(:))+1] + !! \param cscale [false] map [min(ja(:)):max(ja(:))] onto [1:max(ja(:))-min(ja(:))+1] + !! ( iren cannot be specified with rscale/cscale) + !! \param append [false] append to ia,ja + !! \param nzin [none] if append, then first new entry should go in entry nzin+1 + !! ! - ! GETROW must be overridden by all data formats. - ! - interface subroutine psb_d_base_csgetrow(imin,imax,a,nz,ia,ja,val,info,& & jmin,jmax,iren,append,nzin,rscale,cscale) @@ -272,13 +306,25 @@ module psb_d_base_mat_mod end interface ! - ! CSGET methods: getrow, getblk. - ! out(:) = A(imin:imax,:) - ! - ! GETBLK returns a pbs_d_coo_sparse_mat with - ! the same contents. - ! Default implementation at base level - ! in terms of (derived) GETROW + !> Function csgetblk: + !! \brief Get a (subset of) row(s) + !! + !! getblk is very similar to getrow, except that the output + !! is packaged in a psb_d_coo_sparse_mat object + !! + !! \param imin the minimum row index we are interested in + !! \param imax the minimum row index we are interested in + !! \param b the output (sub)matrix + !! \param info return code + !! \param jmin [1] minimum col index + !! \param jmax [a\%get_ncols()] maximum col index + !! \param iren(:) [none] an array to return renumbered indices (iren(ia(:)),iren(ja(:)) + !! \param rscale [false] map [min(ia(:)):max(ia(:))] onto [1:max(ia(:))-min(ia(:))+1] + !! \param cscale [false] map [min(ja(:)):max(ja(:))] onto [1:max(ja(:))-min(ja(:))+1] + !! ( iren cannot be specified with rscale/cscale) + !! \param append [false] append to ia,ja + !! \param nzin [none] if append, then first new entry should go in entry nzin+1 + !! ! interface subroutine psb_d_base_csgetblk(imin,imax,a,b,info,& @@ -296,12 +342,26 @@ module psb_d_base_mat_mod end interface ! - ! CLIP: extract a subset - ! B(:,:) = A(imin:imax,jmin:jmax) - ! control: rscale,cscale as in getblk above. - ! - ! Default implementation at base level in terms of - ! GETBLK. + ! + !> Function csclip: + !! \brief Get a submatrix. + !! + !! csclip is practically identical to getblk. + !! One of them has to go away..... + !! + !! \param b the output submatrix + !! \param info return code + !! \param imin [1] the minimum row index we are interested in + !! \param imax [a%get_nrows()] the minimum row index we are interested in + !! \param jmin [1] minimum col index + !! \param jmax [a\%get_ncols()] maximum col index + !! \param iren(:) [none] an array to return renumbered indices (iren(ia(:)),iren(ja(:)) + !! \param rscale [false] map [min(ia(:)):max(ia(:))] onto [1:max(ia(:))-min(ia(:))+1] + !! \param cscale [false] map [min(ja(:)):max(ja(:))] onto [1:max(ja(:))-min(ja(:))+1] + !! ( iren cannot be specified with rscale/cscale) + !! \param append [false] append to ia,ja + !! \param nzin [none] if append, then first new entry should go in entry nzin+1 + !! ! interface subroutine psb_d_base_csclip(a,b,info,& @@ -316,9 +376,13 @@ module psb_d_base_mat_mod end interface ! - ! GET_DIAG method - ! - ! D(i) = A(i:i), i=1:min(nrows,ncols) + !> Function get_diag: + !! \brief Extract the diagonal of A. + !! + !! D(i) = A(i:i), i=1:min(nrows,ncols) + !! + !! \param d(:) The output diagonal + !! \param info return code. ! interface subroutine psb_d_base_get_diag(a,d,info) @@ -330,10 +394,13 @@ module psb_d_base_mat_mod end interface ! - ! MOLD: make B have the same dinamyc type - ! as A. - ! For compilers not supporting - ! allocate( mold= ) + !> Function mold: + !! \brief Allocate a class(psb_d_base_sparse_mat) with the + !! same dynamic type as the input. + !! This is equivalent to allocate( mold= ) and is provided + !! for those compilers not yet supporting mold. + !! \param b The output variable + !! \param info return code ! interface subroutine psb_d_base_mold(a,b,info) @@ -346,17 +413,12 @@ module psb_d_base_mat_mod ! - ! These are the methods implementing the MEDIATOR pattern - ! to allow switch between arbitrary. - ! Indeed, the TO/FROM FMT can be implemented at the base level - ! in terms of the TO/FROM COO per the MEDIATOR design pattern. - ! This does not prevent most of the derived classes to - ! provide their own versions with shortcuts. - ! A%{MV|CP}_{TO|FROM}_{FMT|COO} - ! MV|CP: copy versus move, i.e. deallocate - ! TO|FROM: invoked from source or target object - ! - ! + !> Function cp_to_coo: + !! \brief Copy and convert to psb_d_coo_sparse_mat + !! Invoked from the source object. + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_d_base_cp_to_coo(a,b,info) import :: psb_ipk_, psb_d_base_sparse_mat, psb_d_coo_sparse_mat, psb_dpk_ @@ -366,6 +428,13 @@ module psb_d_base_mat_mod end subroutine psb_d_base_cp_to_coo end interface + ! + !> Function cp_from_coo: + !! \brief Copy and convert from psb_d_coo_sparse_mat + !! Invoked from the target object. + !! \param b The input variable + !! \param info return code + ! interface subroutine psb_d_base_cp_from_coo(a,b,info) import :: psb_ipk_, psb_d_base_sparse_mat, psb_d_coo_sparse_mat, psb_dpk_ @@ -375,6 +444,14 @@ module psb_d_base_mat_mod end subroutine psb_d_base_cp_from_coo end interface + ! + !> Function cp_to_fmt: + !! \brief Copy and convert to a class(psb_d_base_sparse_mat) + !! Invoked from the source object. Can be implemented by + !! simply invoking a%cp_to_coo(tmp) and then b%cp_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_d_base_cp_to_fmt(a,b,info) import :: psb_ipk_, psb_d_base_sparse_mat, psb_dpk_ @@ -384,6 +461,14 @@ module psb_d_base_mat_mod end subroutine psb_d_base_cp_to_fmt end interface + ! + !> Function cp_from_fmt: + !! \brief Copy and convert from a class(psb_d_base_sparse_mat) + !! Invoked from the target object. Can be implemented by + !! simply invoking b%cp_to_coo(tmp) and then a%cp_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_d_base_cp_from_fmt(a,b,info) import :: psb_ipk_, psb_d_base_sparse_mat, psb_dpk_ @@ -393,6 +478,13 @@ module psb_d_base_mat_mod end subroutine psb_d_base_cp_from_fmt end interface + ! + !> Function mv_to_coo: + !! \brief Convert to psb_d_coo_sparse_mat, freeing the source. + !! Invoked from the source object. + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_d_base_mv_to_coo(a,b,info) import :: psb_ipk_, psb_d_base_sparse_mat, psb_d_coo_sparse_mat, psb_dpk_ @@ -402,6 +494,13 @@ module psb_d_base_mat_mod end subroutine psb_d_base_mv_to_coo end interface + ! + !> Function mv_from_coo: + !! \brief Convert from psb_d_coo_sparse_mat, freeing the source. + !! Invoked from the target object. + !! \param b The input variable + !! \param info return code + ! interface subroutine psb_d_base_mv_from_coo(a,b,info) import :: psb_ipk_, psb_d_base_sparse_mat, psb_d_coo_sparse_mat, psb_dpk_ @@ -411,6 +510,14 @@ module psb_d_base_mat_mod end subroutine psb_d_base_mv_from_coo end interface + ! + !> Function mv_to_fmt: + !! \brief Convert to a class(psb_d_base_sparse_mat), freeing the source. + !! Invoked from the source object. Can be implemented by + !! simply invoking a%mv_to_coo(tmp) and then b%mv_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_d_base_mv_to_fmt(a,b,info) import :: psb_ipk_, psb_d_base_sparse_mat, psb_dpk_ @@ -420,6 +527,14 @@ module psb_d_base_mat_mod end subroutine psb_d_base_mv_to_fmt end interface + ! + !> Function mv_from_fmt: + !! \brief Convert from a class(psb_d_base_sparse_mat), freeing the source. + !! Invoked from the target object. Can be implemented by + !! simply invoking b%mv_to_coo(tmp) and then a%mv_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_d_base_mv_from_fmt(a,b,info) import :: psb_ipk_, psb_d_base_sparse_mat, psb_dpk_ @@ -430,11 +545,13 @@ module psb_d_base_mat_mod end interface ! - ! Transpose methods. - ! You can always default to COO to do the actual - ! transpose work. - ! - interface + !> Function transp: + !! \brief Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! Copyout version + !! \param b The output variable + ! + interface subroutine psb_d_base_transp_2mat(a,b) import :: psb_ipk_, psb_d_base_sparse_mat, psb_base_sparse_mat, psb_dpk_ class(psb_d_base_sparse_mat), intent(in) :: a @@ -442,6 +559,13 @@ module psb_d_base_mat_mod end subroutine psb_d_base_transp_2mat end interface + ! + !> Function transc: + !! \brief Conjugate Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! Copyout version. + !! \param b The output variable + ! interface subroutine psb_d_base_transc_2mat(a,b) import :: psb_ipk_, psb_d_base_sparse_mat, psb_base_sparse_mat, psb_dpk_ @@ -450,6 +574,12 @@ module psb_d_base_mat_mod end subroutine psb_d_base_transc_2mat end interface + ! + !> Function transp: + !! \brief Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! In-place version. + ! interface subroutine psb_d_base_transp_1mat(a) import :: psb_ipk_, psb_d_base_sparse_mat, psb_dpk_ @@ -457,6 +587,12 @@ module psb_d_base_mat_mod end subroutine psb_d_base_transp_1mat end interface + ! + !> Function transc: + !! \brief Conjugate Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! In-place version. + ! interface subroutine psb_d_base_transc_1mat(a) import :: psb_ipk_, psb_d_base_sparse_mat, psb_dpk_ @@ -684,7 +820,11 @@ module psb_d_base_mat_mod ! COO interfaces ! ! == =============== - + + ! + !> + !! \see psb_base_mat_mod::psb_base_reallocate_nz + ! interface subroutine psb_d_coo_reallocate_nz(nz,a) import :: psb_ipk_, psb_d_coo_sparse_mat diff --git a/base/modules/psb_s_base_mat_mod.f90 b/base/modules/psb_s_base_mat_mod.f90 index a1a0d47c..0bd5482e 100644 --- a/base/modules/psb_s_base_mat_mod.f90 +++ b/base/modules/psb_s_base_mat_mod.f90 @@ -39,9 +39,8 @@ module psb_s_base_mat_mod !> \namespace psb_base_mod \class psb_s_base_sparse_mat !! \extends psb_base_mod::psb_base_sparse_mat - !! This module contains the definition of the psb_s_base_sparse_mat - !! type, extending the psb_base_sparse_mat to define a middle - !! level real(psb_spk_) sparse matrix object. + !! The psb_s_base_sparse_mat type, extending psb_base_sparse_mat, + !! defines a middle level real(psb_spk_) sparse matrix object. !! This class object itself does not have any additional members !! with respect to those of the base class. No methods can be fully !! implemented at this level, but we can define the interface for the @@ -49,13 +48,6 @@ module psb_s_base_mat_mod !! field, such as the matrix-vector product; this interface is defined, !! but is supposed to be overridden at the leaf level. !! - !! This module also contains the definition of the - !! psb_s_coo_sparse_mat type and the related methods. This is the - !! reference type for all the format transitions, copies and mv unless - !! methods are implemented that allow the direct transition from one - !! format to another. It is defined here since all other classes must - !! refer to it per the MEDIATOR design pattern. - !! !! About the method MOLD: this has been defined for those compilers !! not yet supporting ALLOCATE( ...,MOLD=...); it's otherwise silly to !! duplicate "by hand" what is specified in the language (in this case F2008) @@ -123,10 +115,23 @@ module psb_s_base_mat_mod private :: s_base_cp_from, s_base_mv_from + !> \namespace psb_base_mod \class psb_s_base_sparse_mat + !! \extends psb_base_mod::psb_base_sparse_mat + !! + !! psb_s_coo_sparse_mat type and the related methods. This is the + !! reference type for all the format transitions, copies and mv unless + !! methods are implemented that allow the direct transition from one + !! format to another. It is defined here since all other classes must + !! refer to it per the MEDIATOR design pattern. + !! type, extends(psb_s_base_sparse_mat) :: psb_s_coo_sparse_mat - + !> Number of nonzeros. integer(psb_ipk_) :: nnz - integer(psb_ipk_), allocatable :: ia(:), ja(:) + !> Row indices. + integer(psb_ipk_), allocatable :: ia(:) + !> Column indices. + integer(psb_ipk_), allocatable :: ja(:) + !> Coefficient values. real(psb_spk_), allocatable :: val(:) contains @@ -206,20 +211,40 @@ module psb_s_base_mat_mod ! ! == ================= - ! - ! CSPUT: Hand over a set of values to A. - ! Simple description: - ! A(IA(1:nz),JA(1:nz)) = VAL(1:NZ) - ! - ! Catches: - ! 1. If A is in the BUILD state, then this method - ! can only be called for COO matrice, in which case it - ! is more like queueing coefficients for later processing; - ! 2. If A is in the UPDATE state, then every derived class must - ! implement it; - ! 3. In the UPDATE state, depending on the value of DUPL flag - ! inside A, it will be A=VAL or A = A + VAL - ! + !> Function csput: + !! \brief Insert coefficients. + !! + !! + !! Given a list of NZ triples + !! (IA(i),JA(i),VAL(i)) + !! record a new coefficient in A such that + !! A(IA(1:nz),JA(1:nz)) = VAL(1:NZ). + !! + !! The internal components IA,JA,VAL are reallocated as necessary. + !! Constraints: + !! - If the matrix A is in the BUILD state, then the method will + !! only work for COO matrices, all other format will throw an error. + !! In this case coefficients are queued inside A for further processing. + !! - If the matrix A is in the UPDATE state, then it can be in any format; + !! the update operation will perform either + !! A(IA(1:nz),JA(1:nz)) = VAL(1:NZ) + !! or + !! A(IA(1:nz),JA(1:nz)) = A(IA(1:nz),JA(1:nz))+VAL(1:NZ) + !! according to the value of DUPLICATE. + !! - Coefficients with (IA(I),JA(I)) outside the ranges specified by + !! IMIN:IMAX,JMIN:JMAX will be ignored. + !! + !! \param nz number of triples in input + !! \param ia(:) the input row indices + !! \param ja(:) the input col indices + !! \param val(:) the input coefficients + !! \param imin minimum row index + !! \param imax maximum row index + !! \param jmin minimum col index + !! \param jmax maximum col index + !! \param info return code + !! \param gtl(:) [none] an array to renumber indices (iren(ia(:)),iren(ja(:)) + !! ! interface subroutine psb_s_base_csput(nz,ia,ja,val,a,imin,imax,jmin,jmax,info,gtl) @@ -233,27 +258,36 @@ module psb_s_base_mat_mod end interface ! - ! CSGET methods: getrow, getblk, clip. - ! getrow is the basic method, the other two are - ! basically convenient wrappers/shorthand. - ! - ! out(:) = A(imin:imax,:) - ! - ! The two methods differ on the output format - ! - ! GETROW returns as the set - ! NZ, IA(1:nz), JA(1:nz), VAL(1:NZ) ! - ! Optional arguments: - ! JMIN,JMAX: get A(IMIN:IMAX,JMIN:JMAX), - ! default 1:ncols - ! APPEND: append at the end of data, in which case - ! # used entries must be in NZ - ! RSCALE, CSCALE: scale output indices at base 1. + !> Function csgetrow: + !! \brief Get a (subset of) row(s) + !! + !! getrow is the basic method by which the other (getblk, clip) can + !! be implemented. + !! + !! Returns the set + !! NZ, IA(1:nz), JA(1:nz), VAL(1:NZ) + !! each identifying the position of a nonzero in A + !! between row indices IMIN:IMAX; + !! IA,JA are reallocated as necessary. + !! + !! \param imin the minimum row index we are interested in + !! \param imax the minimum row index we are interested in + !! \param nz the number of output coefficients + !! \param ia(:) the output row indices + !! \param ja(:) the output col indices + !! \param val(:) the output coefficients + !! \param info return code + !! \param jmin [1] minimum col index + !! \param jmax [a\%get_ncols()] maximum col index + !! \param iren(:) [none] an array to return renumbered indices (iren(ia(:)),iren(ja(:)) + !! \param rscale [false] map [min(ia(:)):max(ia(:))] onto [1:max(ia(:))-min(ia(:))+1] + !! \param cscale [false] map [min(ja(:)):max(ja(:))] onto [1:max(ja(:))-min(ja(:))+1] + !! ( iren cannot be specified with rscale/cscale) + !! \param append [false] append to ia,ja + !! \param nzin [none] if append, then first new entry should go in entry nzin+1 + !! ! - ! GETROW must be overridden by all data formats. - ! - interface subroutine psb_s_base_csgetrow(imin,imax,a,nz,ia,ja,val,info,& & jmin,jmax,iren,append,nzin,rscale,cscale) @@ -272,13 +306,25 @@ module psb_s_base_mat_mod end interface ! - ! CSGET methods: getrow, getblk. - ! out(:) = A(imin:imax,:) - ! - ! GETBLK returns a pbs_s_coo_sparse_mat with - ! the same contents. - ! Default implementation at base level - ! in terms of (derived) GETROW + !> Function csgetblk: + !! \brief Get a (subset of) row(s) + !! + !! getblk is very similar to getrow, except that the output + !! is packaged in a psb_s_coo_sparse_mat object + !! + !! \param imin the minimum row index we are interested in + !! \param imax the minimum row index we are interested in + !! \param b the output (sub)matrix + !! \param info return code + !! \param jmin [1] minimum col index + !! \param jmax [a\%get_ncols()] maximum col index + !! \param iren(:) [none] an array to return renumbered indices (iren(ia(:)),iren(ja(:)) + !! \param rscale [false] map [min(ia(:)):max(ia(:))] onto [1:max(ia(:))-min(ia(:))+1] + !! \param cscale [false] map [min(ja(:)):max(ja(:))] onto [1:max(ja(:))-min(ja(:))+1] + !! ( iren cannot be specified with rscale/cscale) + !! \param append [false] append to ia,ja + !! \param nzin [none] if append, then first new entry should go in entry nzin+1 + !! ! interface subroutine psb_s_base_csgetblk(imin,imax,a,b,info,& @@ -296,12 +342,26 @@ module psb_s_base_mat_mod end interface ! - ! CLIP: extract a subset - ! B(:,:) = A(imin:imax,jmin:jmax) - ! control: rscale,cscale as in getblk above. - ! - ! Default implementation at base level in terms of - ! GETBLK. + ! + !> Function csclip: + !! \brief Get a submatrix. + !! + !! csclip is practically identical to getblk. + !! One of them has to go away..... + !! + !! \param b the output submatrix + !! \param info return code + !! \param imin [1] the minimum row index we are interested in + !! \param imax [a%get_nrows()] the minimum row index we are interested in + !! \param jmin [1] minimum col index + !! \param jmax [a\%get_ncols()] maximum col index + !! \param iren(:) [none] an array to return renumbered indices (iren(ia(:)),iren(ja(:)) + !! \param rscale [false] map [min(ia(:)):max(ia(:))] onto [1:max(ia(:))-min(ia(:))+1] + !! \param cscale [false] map [min(ja(:)):max(ja(:))] onto [1:max(ja(:))-min(ja(:))+1] + !! ( iren cannot be specified with rscale/cscale) + !! \param append [false] append to ia,ja + !! \param nzin [none] if append, then first new entry should go in entry nzin+1 + !! ! interface subroutine psb_s_base_csclip(a,b,info,& @@ -316,9 +376,13 @@ module psb_s_base_mat_mod end interface ! - ! GET_DIAG method - ! - ! D(i) = A(i:i), i=1:min(nrows,ncols) + !> Function get_diag: + !! \brief Extract the diagonal of A. + !! + !! D(i) = A(i:i), i=1:min(nrows,ncols) + !! + !! \param d(:) The output diagonal + !! \param info return code. ! interface subroutine psb_s_base_get_diag(a,d,info) @@ -330,10 +394,13 @@ module psb_s_base_mat_mod end interface ! - ! MOLD: make B have the same dinamyc type - ! as A. - ! For compilers not supporting - ! allocate( mold= ) + !> Function mold: + !! \brief Allocate a class(psb_s_base_sparse_mat) with the + !! same dynamic type as the input. + !! This is equivalent to allocate( mold= ) and is provided + !! for those compilers not yet supporting mold. + !! \param b The output variable + !! \param info return code ! interface subroutine psb_s_base_mold(a,b,info) @@ -346,17 +413,12 @@ module psb_s_base_mat_mod ! - ! These are the methods implementing the MEDIATOR pattern - ! to allow switch between arbitrary. - ! Indeed, the TO/FROM FMT can be implemented at the base level - ! in terms of the TO/FROM COO per the MEDIATOR design pattern. - ! This does not prevent most of the derived classes to - ! provide their own versions with shortcuts. - ! A%{MV|CP}_{TO|FROM}_{FMT|COO} - ! MV|CP: copy versus move, i.e. deallocate - ! TO|FROM: invoked from source or target object - ! - ! + !> Function cp_to_coo: + !! \brief Copy and convert to psb_s_coo_sparse_mat + !! Invoked from the source object. + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_s_base_cp_to_coo(a,b,info) import :: psb_ipk_, psb_s_base_sparse_mat, psb_s_coo_sparse_mat, psb_spk_ @@ -366,6 +428,13 @@ module psb_s_base_mat_mod end subroutine psb_s_base_cp_to_coo end interface + ! + !> Function cp_from_coo: + !! \brief Copy and convert from psb_s_coo_sparse_mat + !! Invoked from the target object. + !! \param b The input variable + !! \param info return code + ! interface subroutine psb_s_base_cp_from_coo(a,b,info) import :: psb_ipk_, psb_s_base_sparse_mat, psb_s_coo_sparse_mat, psb_spk_ @@ -375,6 +444,14 @@ module psb_s_base_mat_mod end subroutine psb_s_base_cp_from_coo end interface + ! + !> Function cp_to_fmt: + !! \brief Copy and convert to a class(psb_s_base_sparse_mat) + !! Invoked from the source object. Can be implemented by + !! simply invoking a%cp_to_coo(tmp) and then b%cp_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_s_base_cp_to_fmt(a,b,info) import :: psb_ipk_, psb_s_base_sparse_mat, psb_spk_ @@ -384,6 +461,14 @@ module psb_s_base_mat_mod end subroutine psb_s_base_cp_to_fmt end interface + ! + !> Function cp_from_fmt: + !! \brief Copy and convert from a class(psb_s_base_sparse_mat) + !! Invoked from the target object. Can be implemented by + !! simply invoking b%cp_to_coo(tmp) and then a%cp_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_s_base_cp_from_fmt(a,b,info) import :: psb_ipk_, psb_s_base_sparse_mat, psb_spk_ @@ -393,6 +478,13 @@ module psb_s_base_mat_mod end subroutine psb_s_base_cp_from_fmt end interface + ! + !> Function mv_to_coo: + !! \brief Convert to psb_s_coo_sparse_mat, freeing the source. + !! Invoked from the source object. + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_s_base_mv_to_coo(a,b,info) import :: psb_ipk_, psb_s_base_sparse_mat, psb_s_coo_sparse_mat, psb_spk_ @@ -402,6 +494,13 @@ module psb_s_base_mat_mod end subroutine psb_s_base_mv_to_coo end interface + ! + !> Function mv_from_coo: + !! \brief Convert from psb_s_coo_sparse_mat, freeing the source. + !! Invoked from the target object. + !! \param b The input variable + !! \param info return code + ! interface subroutine psb_s_base_mv_from_coo(a,b,info) import :: psb_ipk_, psb_s_base_sparse_mat, psb_s_coo_sparse_mat, psb_spk_ @@ -411,6 +510,14 @@ module psb_s_base_mat_mod end subroutine psb_s_base_mv_from_coo end interface + ! + !> Function mv_to_fmt: + !! \brief Convert to a class(psb_s_base_sparse_mat), freeing the source. + !! Invoked from the source object. Can be implemented by + !! simply invoking a%mv_to_coo(tmp) and then b%mv_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_s_base_mv_to_fmt(a,b,info) import :: psb_ipk_, psb_s_base_sparse_mat, psb_spk_ @@ -420,6 +527,14 @@ module psb_s_base_mat_mod end subroutine psb_s_base_mv_to_fmt end interface + ! + !> Function mv_from_fmt: + !! \brief Convert from a class(psb_s_base_sparse_mat), freeing the source. + !! Invoked from the target object. Can be implemented by + !! simply invoking b%mv_to_coo(tmp) and then a%mv_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_s_base_mv_from_fmt(a,b,info) import :: psb_ipk_, psb_s_base_sparse_mat, psb_spk_ @@ -430,11 +545,13 @@ module psb_s_base_mat_mod end interface ! - ! Transpose methods. - ! You can always default to COO to do the actual - ! transpose work. - ! - interface + !> Function transp: + !! \brief Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! Copyout version + !! \param b The output variable + ! + interface subroutine psb_s_base_transp_2mat(a,b) import :: psb_ipk_, psb_s_base_sparse_mat, psb_base_sparse_mat, psb_spk_ class(psb_s_base_sparse_mat), intent(in) :: a @@ -442,6 +559,13 @@ module psb_s_base_mat_mod end subroutine psb_s_base_transp_2mat end interface + ! + !> Function transc: + !! \brief Conjugate Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! Copyout version. + !! \param b The output variable + ! interface subroutine psb_s_base_transc_2mat(a,b) import :: psb_ipk_, psb_s_base_sparse_mat, psb_base_sparse_mat, psb_spk_ @@ -450,6 +574,12 @@ module psb_s_base_mat_mod end subroutine psb_s_base_transc_2mat end interface + ! + !> Function transp: + !! \brief Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! In-place version. + ! interface subroutine psb_s_base_transp_1mat(a) import :: psb_ipk_, psb_s_base_sparse_mat, psb_spk_ @@ -457,6 +587,12 @@ module psb_s_base_mat_mod end subroutine psb_s_base_transp_1mat end interface + ! + !> Function transc: + !! \brief Conjugate Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! In-place version. + ! interface subroutine psb_s_base_transc_1mat(a) import :: psb_ipk_, psb_s_base_sparse_mat, psb_spk_ @@ -684,7 +820,11 @@ module psb_s_base_mat_mod ! COO interfaces ! ! == =============== - + + ! + !> + !! \see psb_base_mat_mod::psb_base_reallocate_nz + ! interface subroutine psb_s_coo_reallocate_nz(nz,a) import :: psb_ipk_, psb_s_coo_sparse_mat diff --git a/base/modules/psb_z_base_mat_mod.f90 b/base/modules/psb_z_base_mat_mod.f90 index 44b8ff44..97c1856a 100644 --- a/base/modules/psb_z_base_mat_mod.f90 +++ b/base/modules/psb_z_base_mat_mod.f90 @@ -39,9 +39,8 @@ module psb_z_base_mat_mod !> \namespace psb_base_mod \class psb_z_base_sparse_mat !! \extends psb_base_mod::psb_base_sparse_mat - !! This module contains the definition of the psb_z_base_sparse_mat - !! type, extending the psb_base_sparse_mat to define a middle - !! level complex(psb_dpk_) sparse matrix object. + !! The psb_z_base_sparse_mat type, extending psb_base_sparse_mat, + !! defines a middle level complex(psb_dpk_) sparse matrix object. !! This class object itself does not have any additional members !! with respect to those of the base class. No methods can be fully !! implemented at this level, but we can define the interface for the @@ -49,13 +48,6 @@ module psb_z_base_mat_mod !! field, such as the matrix-vector product; this interface is defined, !! but is supposed to be overridden at the leaf level. !! - !! This module also contains the definition of the - !! psb_z_coo_sparse_mat type and the related methods. This is the - !! reference type for all the format transitions, copies and mv unless - !! methods are implemented that allow the direct transition from one - !! format to another. It is defined here since all other classes must - !! refer to it per the MEDIATOR design pattern. - !! !! About the method MOLD: this has been defined for those compilers !! not yet supporting ALLOCATE( ...,MOLD=...); it's otherwise silly to !! duplicate "by hand" what is specified in the language (in this case F2008) @@ -123,10 +115,23 @@ module psb_z_base_mat_mod private :: z_base_cp_from, z_base_mv_from + !> \namespace psb_base_mod \class psb_z_base_sparse_mat + !! \extends psb_base_mod::psb_base_sparse_mat + !! + !! psb_z_coo_sparse_mat type and the related methods. This is the + !! reference type for all the format transitions, copies and mv unless + !! methods are implemented that allow the direct transition from one + !! format to another. It is defined here since all other classes must + !! refer to it per the MEDIATOR design pattern. + !! type, extends(psb_z_base_sparse_mat) :: psb_z_coo_sparse_mat - + !> Number of nonzeros. integer(psb_ipk_) :: nnz - integer(psb_ipk_), allocatable :: ia(:), ja(:) + !> Row indices. + integer(psb_ipk_), allocatable :: ia(:) + !> Column indices. + integer(psb_ipk_), allocatable :: ja(:) + !> Coefficient values. complex(psb_dpk_), allocatable :: val(:) contains @@ -206,20 +211,40 @@ module psb_z_base_mat_mod ! ! == ================= - ! - ! CSPUT: Hand over a set of values to A. - ! Simple description: - ! A(IA(1:nz),JA(1:nz)) = VAL(1:NZ) - ! - ! Catches: - ! 1. If A is in the BUILD state, then this method - ! can only be called for COO matrice, in which case it - ! is more like queueing coefficients for later processing; - ! 2. If A is in the UPDATE state, then every derived class must - ! implement it; - ! 3. In the UPDATE state, depending on the value of DUPL flag - ! inside A, it will be A=VAL or A = A + VAL - ! + !> Function csput: + !! \brief Insert coefficients. + !! + !! + !! Given a list of NZ triples + !! (IA(i),JA(i),VAL(i)) + !! record a new coefficient in A such that + !! A(IA(1:nz),JA(1:nz)) = VAL(1:NZ). + !! + !! The internal components IA,JA,VAL are reallocated as necessary. + !! Constraints: + !! - If the matrix A is in the BUILD state, then the method will + !! only work for COO matrices, all other format will throw an error. + !! In this case coefficients are queued inside A for further processing. + !! - If the matrix A is in the UPDATE state, then it can be in any format; + !! the update operation will perform either + !! A(IA(1:nz),JA(1:nz)) = VAL(1:NZ) + !! or + !! A(IA(1:nz),JA(1:nz)) = A(IA(1:nz),JA(1:nz))+VAL(1:NZ) + !! according to the value of DUPLICATE. + !! - Coefficients with (IA(I),JA(I)) outside the ranges specified by + !! IMIN:IMAX,JMIN:JMAX will be ignored. + !! + !! \param nz number of triples in input + !! \param ia(:) the input row indices + !! \param ja(:) the input col indices + !! \param val(:) the input coefficients + !! \param imin minimum row index + !! \param imax maximum row index + !! \param jmin minimum col index + !! \param jmax maximum col index + !! \param info return code + !! \param gtl(:) [none] an array to renumber indices (iren(ia(:)),iren(ja(:)) + !! ! interface subroutine psb_z_base_csput(nz,ia,ja,val,a,imin,imax,jmin,jmax,info,gtl) @@ -233,27 +258,36 @@ module psb_z_base_mat_mod end interface ! - ! CSGET methods: getrow, getblk, clip. - ! getrow is the basic method, the other two are - ! basically convenient wrappers/shorthand. - ! - ! out(:) = A(imin:imax,:) - ! - ! The two methods differ on the output format - ! - ! GETROW returns as the set - ! NZ, IA(1:nz), JA(1:nz), VAL(1:NZ) ! - ! Optional arguments: - ! JMIN,JMAX: get A(IMIN:IMAX,JMIN:JMAX), - ! default 1:ncols - ! APPEND: append at the end of data, in which case - ! # used entries must be in NZ - ! RSCALE, CSCALE: scale output indices at base 1. + !> Function csgetrow: + !! \brief Get a (subset of) row(s) + !! + !! getrow is the basic method by which the other (getblk, clip) can + !! be implemented. + !! + !! Returns the set + !! NZ, IA(1:nz), JA(1:nz), VAL(1:NZ) + !! each identifying the position of a nonzero in A + !! between row indices IMIN:IMAX; + !! IA,JA are reallocated as necessary. + !! + !! \param imin the minimum row index we are interested in + !! \param imax the minimum row index we are interested in + !! \param nz the number of output coefficients + !! \param ia(:) the output row indices + !! \param ja(:) the output col indices + !! \param val(:) the output coefficients + !! \param info return code + !! \param jmin [1] minimum col index + !! \param jmax [a\%get_ncols()] maximum col index + !! \param iren(:) [none] an array to return renumbered indices (iren(ia(:)),iren(ja(:)) + !! \param rscale [false] map [min(ia(:)):max(ia(:))] onto [1:max(ia(:))-min(ia(:))+1] + !! \param cscale [false] map [min(ja(:)):max(ja(:))] onto [1:max(ja(:))-min(ja(:))+1] + !! ( iren cannot be specified with rscale/cscale) + !! \param append [false] append to ia,ja + !! \param nzin [none] if append, then first new entry should go in entry nzin+1 + !! ! - ! GETROW must be overridden by all data formats. - ! - interface subroutine psb_z_base_csgetrow(imin,imax,a,nz,ia,ja,val,info,& & jmin,jmax,iren,append,nzin,rscale,cscale) @@ -272,13 +306,25 @@ module psb_z_base_mat_mod end interface ! - ! CSGET methods: getrow, getblk. - ! out(:) = A(imin:imax,:) - ! - ! GETBLK returns a pbs_z_coo_sparse_mat with - ! the same contents. - ! Default implementation at base level - ! in terms of (derived) GETROW + !> Function csgetblk: + !! \brief Get a (subset of) row(s) + !! + !! getblk is very similar to getrow, except that the output + !! is packaged in a psb_z_coo_sparse_mat object + !! + !! \param imin the minimum row index we are interested in + !! \param imax the minimum row index we are interested in + !! \param b the output (sub)matrix + !! \param info return code + !! \param jmin [1] minimum col index + !! \param jmax [a\%get_ncols()] maximum col index + !! \param iren(:) [none] an array to return renumbered indices (iren(ia(:)),iren(ja(:)) + !! \param rscale [false] map [min(ia(:)):max(ia(:))] onto [1:max(ia(:))-min(ia(:))+1] + !! \param cscale [false] map [min(ja(:)):max(ja(:))] onto [1:max(ja(:))-min(ja(:))+1] + !! ( iren cannot be specified with rscale/cscale) + !! \param append [false] append to ia,ja + !! \param nzin [none] if append, then first new entry should go in entry nzin+1 + !! ! interface subroutine psb_z_base_csgetblk(imin,imax,a,b,info,& @@ -296,12 +342,26 @@ module psb_z_base_mat_mod end interface ! - ! CLIP: extract a subset - ! B(:,:) = A(imin:imax,jmin:jmax) - ! control: rscale,cscale as in getblk above. - ! - ! Default implementation at base level in terms of - ! GETBLK. + ! + !> Function csclip: + !! \brief Get a submatrix. + !! + !! csclip is practically identical to getblk. + !! One of them has to go away..... + !! + !! \param b the output submatrix + !! \param info return code + !! \param imin [1] the minimum row index we are interested in + !! \param imax [a%get_nrows()] the minimum row index we are interested in + !! \param jmin [1] minimum col index + !! \param jmax [a\%get_ncols()] maximum col index + !! \param iren(:) [none] an array to return renumbered indices (iren(ia(:)),iren(ja(:)) + !! \param rscale [false] map [min(ia(:)):max(ia(:))] onto [1:max(ia(:))-min(ia(:))+1] + !! \param cscale [false] map [min(ja(:)):max(ja(:))] onto [1:max(ja(:))-min(ja(:))+1] + !! ( iren cannot be specified with rscale/cscale) + !! \param append [false] append to ia,ja + !! \param nzin [none] if append, then first new entry should go in entry nzin+1 + !! ! interface subroutine psb_z_base_csclip(a,b,info,& @@ -316,9 +376,13 @@ module psb_z_base_mat_mod end interface ! - ! GET_DIAG method - ! - ! D(i) = A(i:i), i=1:min(nrows,ncols) + !> Function get_diag: + !! \brief Extract the diagonal of A. + !! + !! D(i) = A(i:i), i=1:min(nrows,ncols) + !! + !! \param d(:) The output diagonal + !! \param info return code. ! interface subroutine psb_z_base_get_diag(a,d,info) @@ -330,10 +394,13 @@ module psb_z_base_mat_mod end interface ! - ! MOLD: make B have the same dinamyc type - ! as A. - ! For compilers not supporting - ! allocate( mold= ) + !> Function mold: + !! \brief Allocate a class(psb_z_base_sparse_mat) with the + !! same dynamic type as the input. + !! This is equivalent to allocate( mold= ) and is provided + !! for those compilers not yet supporting mold. + !! \param b The output variable + !! \param info return code ! interface subroutine psb_z_base_mold(a,b,info) @@ -346,17 +413,12 @@ module psb_z_base_mat_mod ! - ! These are the methods implementing the MEDIATOR pattern - ! to allow switch between arbitrary. - ! Indeed, the TO/FROM FMT can be implemented at the base level - ! in terms of the TO/FROM COO per the MEDIATOR design pattern. - ! This does not prevent most of the derived classes to - ! provide their own versions with shortcuts. - ! A%{MV|CP}_{TO|FROM}_{FMT|COO} - ! MV|CP: copy versus move, i.e. deallocate - ! TO|FROM: invoked from source or target object - ! - ! + !> Function cp_to_coo: + !! \brief Copy and convert to psb_z_coo_sparse_mat + !! Invoked from the source object. + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_z_base_cp_to_coo(a,b,info) import :: psb_ipk_, psb_z_base_sparse_mat, psb_z_coo_sparse_mat, psb_dpk_ @@ -366,6 +428,13 @@ module psb_z_base_mat_mod end subroutine psb_z_base_cp_to_coo end interface + ! + !> Function cp_from_coo: + !! \brief Copy and convert from psb_z_coo_sparse_mat + !! Invoked from the target object. + !! \param b The input variable + !! \param info return code + ! interface subroutine psb_z_base_cp_from_coo(a,b,info) import :: psb_ipk_, psb_z_base_sparse_mat, psb_z_coo_sparse_mat, psb_dpk_ @@ -375,6 +444,14 @@ module psb_z_base_mat_mod end subroutine psb_z_base_cp_from_coo end interface + ! + !> Function cp_to_fmt: + !! \brief Copy and convert to a class(psb_z_base_sparse_mat) + !! Invoked from the source object. Can be implemented by + !! simply invoking a%cp_to_coo(tmp) and then b%cp_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_z_base_cp_to_fmt(a,b,info) import :: psb_ipk_, psb_z_base_sparse_mat, psb_dpk_ @@ -384,6 +461,14 @@ module psb_z_base_mat_mod end subroutine psb_z_base_cp_to_fmt end interface + ! + !> Function cp_from_fmt: + !! \brief Copy and convert from a class(psb_z_base_sparse_mat) + !! Invoked from the target object. Can be implemented by + !! simply invoking b%cp_to_coo(tmp) and then a%cp_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_z_base_cp_from_fmt(a,b,info) import :: psb_ipk_, psb_z_base_sparse_mat, psb_dpk_ @@ -393,6 +478,13 @@ module psb_z_base_mat_mod end subroutine psb_z_base_cp_from_fmt end interface + ! + !> Function mv_to_coo: + !! \brief Convert to psb_z_coo_sparse_mat, freeing the source. + !! Invoked from the source object. + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_z_base_mv_to_coo(a,b,info) import :: psb_ipk_, psb_z_base_sparse_mat, psb_z_coo_sparse_mat, psb_dpk_ @@ -402,6 +494,13 @@ module psb_z_base_mat_mod end subroutine psb_z_base_mv_to_coo end interface + ! + !> Function mv_from_coo: + !! \brief Convert from psb_z_coo_sparse_mat, freeing the source. + !! Invoked from the target object. + !! \param b The input variable + !! \param info return code + ! interface subroutine psb_z_base_mv_from_coo(a,b,info) import :: psb_ipk_, psb_z_base_sparse_mat, psb_z_coo_sparse_mat, psb_dpk_ @@ -411,6 +510,14 @@ module psb_z_base_mat_mod end subroutine psb_z_base_mv_from_coo end interface + ! + !> Function mv_to_fmt: + !! \brief Convert to a class(psb_z_base_sparse_mat), freeing the source. + !! Invoked from the source object. Can be implemented by + !! simply invoking a%mv_to_coo(tmp) and then b%mv_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_z_base_mv_to_fmt(a,b,info) import :: psb_ipk_, psb_z_base_sparse_mat, psb_dpk_ @@ -420,6 +527,14 @@ module psb_z_base_mat_mod end subroutine psb_z_base_mv_to_fmt end interface + ! + !> Function mv_from_fmt: + !! \brief Convert from a class(psb_z_base_sparse_mat), freeing the source. + !! Invoked from the target object. Can be implemented by + !! simply invoking b%mv_to_coo(tmp) and then a%mv_from_coo(tmp). + !! \param b The output variable + !! \param info return code + ! interface subroutine psb_z_base_mv_from_fmt(a,b,info) import :: psb_ipk_, psb_z_base_sparse_mat, psb_dpk_ @@ -430,11 +545,13 @@ module psb_z_base_mat_mod end interface ! - ! Transpose methods. - ! You can always default to COO to do the actual - ! transpose work. - ! - interface + !> Function transp: + !! \brief Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! Copyout version + !! \param b The output variable + ! + interface subroutine psb_z_base_transp_2mat(a,b) import :: psb_ipk_, psb_z_base_sparse_mat, psb_base_sparse_mat, psb_dpk_ class(psb_z_base_sparse_mat), intent(in) :: a @@ -442,6 +559,13 @@ module psb_z_base_mat_mod end subroutine psb_z_base_transp_2mat end interface + ! + !> Function transc: + !! \brief Conjugate Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! Copyout version. + !! \param b The output variable + ! interface subroutine psb_z_base_transc_2mat(a,b) import :: psb_ipk_, psb_z_base_sparse_mat, psb_base_sparse_mat, psb_dpk_ @@ -450,6 +574,12 @@ module psb_z_base_mat_mod end subroutine psb_z_base_transc_2mat end interface + ! + !> Function transp: + !! \brief Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! In-place version. + ! interface subroutine psb_z_base_transp_1mat(a) import :: psb_ipk_, psb_z_base_sparse_mat, psb_dpk_ @@ -457,6 +587,12 @@ module psb_z_base_mat_mod end subroutine psb_z_base_transp_1mat end interface + ! + !> Function transc: + !! \brief Conjugate Transpose. Can always be implemented by staging through a COO + !! temporary for which transpose is very easy. + !! 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SRC="img1.png" ALT="$A$">; only available with the $CG$ method.
diff --git a/docs/html/node38.html b/docs/html/node38.html index 06716813..a9d54a6e 100644 --- a/docs/html/node38.html +++ b/docs/html/node38.html @@ -89,13 +89,13 @@ Data types

$x$, $y$, $\alpha$,
alpha
the scalar $\alpha$.
@@ -147,7 +147,7 @@ Specified as: a number of the data type indicated in Table .
@@ -160,7 +160,7 @@ Intent: in. Specified as: a rank one or two array containing numbers of type specified in Table 1. The rank of $x$ must be the same of 1. The rank of $y$ must be the same of $x$.
diff --git a/docs/html/node39.html b/docs/html/node39.html index cfb9766c..309e2d67 100644 --- a/docs/html/node39.html +++ b/docs/html/node39.html @@ -57,7 +57,7 @@ psb_gedot -- Dot Product

This function computes dot product between two vectors $x$ and $y$.
If $x$ and

Else if $x$ and
$dot$, $x$,
x
the local portion of global dense matrix $x$.
@@ -178,7 +178,7 @@ Intent: in. Specified as: an array of rank one or two containing numbers of type specified in Table 2. The rank of $x$ must be the same of 2. The rank of $y$ must be the same of $x$.
@@ -226,7 +226,7 @@ Specified as: a structured data of type descdatapsb_desc_type.
Function value
is the dot product of subvectors $x$ and $\cal I$, $\cal B$ and
\includegraphics[scale=0.65]{figures/points.eps} \begin{displaymath}amax \leftarrow \max_i \vert x_i\vert\end{displaymath}

else if $x$ is a complex vector then it computes infinity-norm as:

@@ -95,7 +95,7 @@ amax \leftarrow \max_i {(|re(x_i)| + |im(x_i)|)} --> \begin{displaymath}amax \leftarrow \max_i {(\vert re(x_i)\vert + \vert im(x_i)\vert)}\end{displaymath} @@ -117,11 +117,11 @@ Data types
@@ -160,7 +160,7 @@ Data types
x
the local portion of global dense matrix $x$. @@ -193,7 +193,7 @@ Specified as: a structured data of type descdatapsb_desc_type.
Function value
is the infinity norm of subvector $x$.
diff --git a/docs/html/node42.html b/docs/html/node42.html index e8826722..0a520160 100644 --- a/docs/html/node42.html +++ b/docs/html/node42.html @@ -58,7 +58,7 @@ psb_geamaxs -- Generalized Infinity Norm

This subroutine computes a series of infinity norms on the columns of a dense matrix $x$:

@@ -70,7 +70,7 @@ res(i) \leftarrow \max_k |x(k,i)| --> \begin{displaymath}res(i) \leftarrow \max_k \vert x(k,i)\vert \end{displaymath} @@ -92,11 +92,11 @@ Data types
$amax$ $x$ Function
@@ -135,7 +135,7 @@ Data types
x
the local portion of global dense matrix $x$.
@@ -165,7 +165,7 @@ Specified as: a structured data of type descdatapsb_desc_type.
res
is the infinity norm of the columns of $x$.
diff --git a/docs/html/node43.html b/docs/html/node43.html index 17dc137f..d6d90c4e 100644 --- a/docs/html/node43.html +++ b/docs/html/node43.html @@ -57,12 +57,12 @@ psb_geasum -- 1-Norm of Vector

This function computes the 1-norm of a vector $x$.
If $x$ is a real vector it computes 1-norm as: @@ -82,7 +82,7 @@ asum \leftarrow \|x_i\|

else if $x$ is a vector then it computes 1-norm as:

@@ -94,7 +94,7 @@ asum \leftarrow \|re(x)\|_1 + \|im(x)\|_1 --> \begin{displaymath}asum \leftarrow \Vert re(x)\Vert _1 + \Vert im(x)\Vert _1\end{displaymath} @@ -116,11 +116,11 @@ Data types
$res$ $x$ Subroutine
@@ -159,7 +159,7 @@ Data types
x
the local portion of global dense matrix $x$. @@ -192,7 +192,7 @@ Specified as: a structured data of type descdatapsb_desc_type.
Function value
is the 1-norm of vector $x$.
diff --git a/docs/html/node44.html b/docs/html/node44.html index 32646510..6169ca6a 100644 --- a/docs/html/node44.html +++ b/docs/html/node44.html @@ -58,7 +58,7 @@ psb_geasums -- Generalized 1-Norm of Vector

This subroutine computes a series of 1-norms on the columns of a dense matrix $x$:

@@ -70,19 +70,19 @@ res(i) \leftarrow \max_k |x(k,i)| --> \begin{displaymath}res(i) \leftarrow \max_k \vert x(k,i)\vert \end{displaymath}

This function computes the 1-norm of a vector $x$.
If $x$ is a real vector it computes 1-norm as: @@ -95,14 +95,14 @@ res(i) \leftarrow \|x_i\| --> \begin{displaymath}res(i) \leftarrow \Vert x_i\Vert\end{displaymath}

else if $x$ is a complex vector then it computes 1-norm as:

@@ -114,7 +114,7 @@ res(i) \leftarrow \|re(x)\|_1 + \|im(x)\|_1 --> \begin{displaymath}res(i) \leftarrow \Vert re(x)\Vert _1 + \Vert im(x)\Vert _1\end{displaymath} @@ -136,11 +136,11 @@ Data types
$asum$ $x$ Function
@@ -179,7 +179,7 @@ Data types
x
the local portion of global dense matrix $x$. @@ -212,7 +212,7 @@ Specified as: a structured data of type descdatapsb_desc_type.
res
contains the 1-norm of (the columns of) $x$.
diff --git a/docs/html/node45.html b/docs/html/node45.html index 3fa4e1e7..8f2a717d 100644 --- a/docs/html/node45.html +++ b/docs/html/node45.html @@ -57,12 +57,12 @@ psb_genrm2 -- 2-Norm of Vector

This function computes the 2-norm of a vector $x$.
If $x$ is a double precision real vector it computes 2-norm as: @@ -82,7 +82,7 @@ nrm2 \leftarrow \sqrt{x^T x}

else if $x$ is double precision complex vector then it computes 2-norm as:

@@ -111,11 +111,11 @@ Data types
$res$ $x$ Subroutine
@@ -159,7 +159,7 @@ psb_genrm2(x, desc_a, info)
x
the local portion of global dense matrix $x$.
@@ -191,7 +191,7 @@ Specified as: a structured data of type descdatapsb_desc_type.
Function Value
is the 2-norm of subvector $x$.
diff --git a/docs/html/node46.html b/docs/html/node46.html index 8abbd9db..abfc24f5 100644 --- a/docs/html/node46.html +++ b/docs/html/node46.html @@ -58,7 +58,7 @@ psb_genrm2s -- Generalized 2-Norm of Vector

This subroutine computes a series of 2-norms on the columns of a dense matrix $x$:

@@ -92,11 +92,11 @@ Data types
$nrm2$ $x$ Function
@@ -135,7 +135,7 @@ Data types
x
the local portion of global dense matrix $x$. @@ -168,7 +168,7 @@ Specified as: a structured data of type descdatapsb_desc_type.
res
contains the 1-norm of (the columns of) $x$.
diff --git a/docs/html/node47.html b/docs/html/node47.html index 784e2fe1..a88cabce 100644 --- a/docs/html/node47.html +++ b/docs/html/node47.html @@ -71,7 +71,7 @@ nrmi \leftarrow \|A\|_\infty --> \begin{displaymath}nrmi \leftarrow \Vert A\Vert _\infty \end{displaymath} diff --git a/docs/html/node48.html b/docs/html/node48.html index 56281004..9565201e 100644 --- a/docs/html/node48.html +++ b/docs/html/node48.html @@ -121,7 +121,7 @@ y \leftarrow \alpha P_r A^H P_c x + \beta y where:
$x$
is the global dense submatrix WIDTH="16" HEIGHT="14" ALIGN="BOTTOM" BORDER="0" SRC="img1.png" ALT="$A$">, $x$, $y$, $\alpha$,
alpha
the scalar $\alpha$.
@@ -249,7 +249,7 @@ Specified as: a structured data of type spdatapsb_spmat_type.
x
the local portion of global dense matrix $x$. @@ -263,7 +263,7 @@ Intent: in. Specified as: a rank one or two array containing numbers of type specified in Table 11. The rank of $x$ must be the same of 11. The rank of $y$ must be the same of $x$.
@@ -341,7 +341,7 @@ Type: optional Intent: in.
Default: $trans = N$
@@ -359,7 +359,7 @@ Type: optional Intent: inout.
Specified as: a rank one array of the same type of $x$ and \begin{eqnarray*} y &\leftarrow& \alpha P_r T^{-1} P_c x + \beta y\\ @@ -88,7 +88,7 @@ y &\leftarrow& \alpha P_r T^{-H} P_c D x + \beta y\\ where: <DL> <DT><STRONG><IMG - WIDTH=
is the global dense submatrix WIDTH="15" HEIGHT="14" ALIGN="BOTTOM" BORDER="0" SRC="img56.png" ALT="$T$">, $x$, WIDTH="18" HEIGHT="14" ALIGN="BOTTOM" BORDER="0" SRC="img57.png" ALT="$D$">, $\alpha$,
alpha
the scalar $\alpha$.
@@ -226,7 +226,7 @@ Specified as: a structured data type specified in
x
the local portion of global dense matrix $x$. @@ -240,7 +240,7 @@ Intent: in. Specified as: a rank one or two array containing numbers of type specified in Table 12. The rank of $x$ must be the same of 12. The rank of $y$ must be the same of $x$.
@@ -316,7 +316,7 @@ Type: optional Intent: in.
Default: $trans = N$
@@ -342,7 +342,7 @@ Type: optional Intent: in.
Default: $unitd = U$
@@ -405,7 +405,7 @@ Type: optional Intent: inout.
Specified as: a rank one array of the same type of $x$ with the TARGET attribute. diff --git a/docs/html/node51.html b/docs/html/node51.html index bd59901e..a9c99ba6 100644 --- a/docs/html/node51.html +++ b/docs/html/node51.html @@ -78,7 +78,7 @@ x \leftarrow \alpha x where:
$x$
is a global dense submatrix. @@ -95,10 +95,10 @@ Data types
$res$ $x$ Subroutine
@@ -141,7 +141,7 @@ call psb_halo(x, desc_a, info, alpha, work, data)
x
global dense matrix $x$.
@@ -168,7 +168,7 @@ Specified as: a structured data of type descdatapsb_desc_type.
alpha
the scalar $\alpha$.
@@ -195,7 +195,7 @@ Type: optional Intent: inout.
Specified as: a rank one array of the same type of $x$ with the POINTER attribute. @@ -218,7 +218,7 @@ index list on which to base the data exchange.
x
global dense result matrix $x$.
@@ -255,7 +255,7 @@ Sample discretization mesh.
$\alpha$, $x$ Subroutine
\includegraphics[scale=0.45]{figures/try8x8.eps} @@ -279,7 +279,7 @@ distribution is such that each process will own 32 entries in the index space, with a halo made of 8 entries placed at local indices 33 through 40. If process 0 assigns an initial value of 1 to its entries in the $x$ vector, and process 1 assigns a value of 2, then after a call to psb_halo the contents of the local vectors will be the diff --git a/docs/html/node52.html b/docs/html/node52.html index febb1e51..60d426e1 100644 --- a/docs/html/node52.html +++ b/docs/html/node52.html @@ -68,7 +68,7 @@ x \leftarrow Q x --> \begin{displaymath}x \leftarrow Q x \end{displaymath}
@@ -77,11 +77,11 @@ x \leftarrow Q x where:
$x$
is the global dense submatrix $x$
@@ -110,7 +110,7 @@ Data types
@@ -150,7 +150,7 @@ call psb_ovrl(x, desc_a, info, update=update_type, work=work)
x
global dense matrix $x$.
@@ -220,7 +220,7 @@ Type: optional Intent: inout.
Specified as: a one dimensional array of the same type of $x$. @@ -231,7 +231,7 @@ Specified as: a one dimensional array of the same type of
x
global dense result matrix $x$.
@@ -295,7 +295,7 @@ Sample discretization mesh.
$x$ Subroutine
\includegraphics[scale=0.65]{figures/try8x8_ov.eps} @@ -320,7 +320,7 @@ distribution is such that each process will own 40 entries in the index space, with an overlap of 16 entries placed at local indices 25 through 40; the halo will run from local index 41 through local index 48.. If process 0 assigns an initial value of 1 to its entries in the $x$ vector, and process 1 assigns a value of 2, then after a call to psb_ovrl with psb_avg_ and a call to diff --git a/docs/html/node53.html b/docs/html/node53.html index 3066418e..3920b8a7 100644 --- a/docs/html/node53.html +++ b/docs/html/node53.html @@ -101,7 +101,7 @@ process $i$.
$collect$
is the collect function. diff --git a/docs/html/node54.html b/docs/html/node54.html index 36f43dcc..92ccced2 100644 --- a/docs/html/node54.html +++ b/docs/html/node54.html @@ -68,7 +68,7 @@ loc\_x_i \leftarrow scatter(glob\_x) --> \begin{displaymath}loc\_x_i \leftarrow scatter(glob\_x) \end{displaymath}
@@ -99,7 +99,7 @@ process $i$.
$scatter$
is the scatter function. diff --git a/docs/html/node56.html b/docs/html/node56.html index 8917d80f..5148db0b 100644 --- a/docs/html/node56.html +++ b/docs/html/node56.html @@ -125,7 +125,7 @@ Specified as: an integer value $0,1$, default $0$. diff --git a/docs/html/node57.html b/docs/html/node57.html index 06b28b64..c1b4a872 100644 --- a/docs/html/node57.html +++ b/docs/html/node57.html @@ -95,7 +95,7 @@ Type: required. Intent: in.
Specified as: an integer array of length $nz$.
@@ -109,7 +109,7 @@ Type: required. Intent: in.
Specified as: an integer array of length $nz$. diff --git a/docs/html/node6.html b/docs/html/node6.html index af78326b..eba51fff 100644 --- a/docs/html/node6.html +++ b/docs/html/node6.html @@ -62,7 +62,7 @@ space to which there corresponds an index space and a matrix sparsity pattern. As an example, consider a cell-centered finite-volume discretization of the Navier-Stokes equations on a simulation domain; the index space $1\dots n$ is isomorphic to the set of cell centers, whereas the pattern of the associated linear system matrix is @@ -73,7 +73,7 @@ by the discretization stencil. Thus the first order of business is to establish an index space, and this is done with a call to psb_cdall in which we specify the size of the index space $n$ and the allocation of the elements of the index space to the various processes making up the MPI (virtual) @@ -82,7 +82,7 @@ parallel machine.

The index space is partitioned among processes, and this creates a mapping from the ``global'' numbering $1\dots n$ to a numbering ``local'' to each process; each process $1\dots n_{\hbox{row}_i}$, each element of which corresponds to a certain element of $1\dots n$. The user does not set explicitly this mapping; when the application needs to indicate to which element of the index @@ -107,7 +107,7 @@ library will translate into the appropriate ``local'' numbering.

For a given index space $1\dots n$ there are many possible associated topologies, i.e. many different discretization stencils; thus the diff --git a/docs/html/node62.html b/docs/html/node62.html index 5031e56e..8bfaf3c8 100644 --- a/docs/html/node62.html +++ b/docs/html/node62.html @@ -130,7 +130,7 @@ An integer value; 0 means no error has been detected.

  • The descriptor may be in either the build or assembled state.
  • Providing a good estimate for the number of nonzeroes $nnz$ in the assembled matrix may substantially improve performance in the diff --git a/docs/html/node63.html b/docs/html/node63.html index aaf0460b..9a8a222f 100644 --- a/docs/html/node63.html +++ b/docs/html/node63.html @@ -90,7 +90,7 @@ Type:required. Intent: in.
    Specified as: an integer array of size $nz$. @@ -104,7 +104,7 @@ Type:required. Intent: in.
    Specified as: an integer array of size $nz$. @@ -118,11 +118,11 @@ Type:required. Intent: in.
    Specified as: an array of size $nz$. Must be of the same type and kind of the aspk component of the sparse matrix $a$. diff --git a/docs/html/node67.html b/docs/html/node67.html index 634d9fb3..5c58ab01 100644 --- a/docs/html/node67.html +++ b/docs/html/node67.html @@ -92,7 +92,7 @@ Specified as: Integer scalar, default $1$. It is not a valid argument if $x$ is a rank-1 array. @@ -110,7 +110,7 @@ Specified as: Integer scalar, default $1$. It is not a valid argument if $x$ is a rank-1 array. diff --git a/docs/html/node68.html b/docs/html/node68.html index 797ae7f1..b3a816ce 100644 --- a/docs/html/node68.html +++ b/docs/html/node68.html @@ -70,7 +70,7 @@ call psb_geins(m, irw, val, x, desc_a, info,dupl)
    m
    Number of rows in $val$ to be inserted.
    @@ -88,7 +88,7 @@ Specified as: an integer value. SRC="img4.png" ALT="$i$"> of $val$ will be inserted into the local row corresponding to the global row index $y$ is not present, then $x$ is overwritten with the translated integer indices. Scope: global @@ -148,7 +148,7 @@ Specified as: a rank one integer array. WIDTH="12" HEIGHT="30" ALIGN="MIDDLE" BORDER="0" SRC="img26.png" ALT="$y$"> is overwritten with the translated integer indices, and $x$ is left unchanged. diff --git a/docs/html/node73.html b/docs/html/node73.html index 40f0ad5f..35b0ce6e 100644 --- a/docs/html/node73.html +++ b/docs/html/node73.html @@ -116,7 +116,7 @@ Specified as: a character variable Ignore, Warning or SRC="img26.png" ALT="$y$"> is not present, then $x$ is overwritten with the translated integer indices. Scope: global @@ -136,7 +136,7 @@ Specified as: a rank one integer array. WIDTH="12" HEIGHT="30" ALIGN="MIDDLE" BORDER="0" SRC="img26.png" ALT="$y$"> is overwritten with the translated integer indices, and $x$ is left unchanged. diff --git a/docs/html/node74.html b/docs/html/node74.html index d25641fd..eba71b11 100644 --- a/docs/html/node74.html +++ b/docs/html/node74.html @@ -100,7 +100,7 @@ Specified as: a structured data of type descdatapsb_desc_type.
    Function value
    A logical mask which is true if $x$ is owned by the current process Scope: local diff --git a/docs/html/node75.html b/docs/html/node75.html index 16e56ca5..b36d152f 100644 --- a/docs/html/node75.html +++ b/docs/html/node75.html @@ -111,7 +111,7 @@ Specified as: a character variable Ignore, Warning or
    y
    A logical mask which is true for all corresponding entries of $x$ that are owned by the current process Scope: local diff --git a/docs/html/node76.html b/docs/html/node76.html index e27dc8cc..1920a1a3 100644 --- a/docs/html/node76.html +++ b/docs/html/node76.html @@ -100,7 +100,7 @@ Specified as: a structured data of type descdatapsb_desc_type.
    Function value
    A logical mask which is true if $x$ is local to the current process Scope: local diff --git a/docs/html/node77.html b/docs/html/node77.html index 65d02b3c..71a6ab70 100644 --- a/docs/html/node77.html +++ b/docs/html/node77.html @@ -111,7 +111,7 @@ Specified as: a character variable Ignore, Warning or
    y
    A logical mask which is true for all corresponding entries of $x$ that are local to the current process Scope: local diff --git a/docs/html/node80.html b/docs/html/node80.html index 07979b43..2ed58e69 100644 --- a/docs/html/node80.html +++ b/docs/html/node80.html @@ -133,7 +133,7 @@ Specified as: an integer $>0$, default: $row$. @@ -208,7 +208,7 @@ An integer value; 0 means no error has been detected.
    1. The output $nz$ is always the size of the output generated by the current call; thus, if append=.true., the total output diff --git a/docs/html/node82.html b/docs/html/node82.html index d519b69c..28292c6d 100644 --- a/docs/html/node82.html +++ b/docs/html/node82.html @@ -154,7 +154,7 @@ Type: Optional
      An integer array of rank 1, whose entries are moved to the same position as the corresponding entries in $x$.
    @@ -191,10 +191,10 @@ position as the corresponding entries in $ix(1:n)$ where $n$ is the size of $x$ are initialized to