base/modules/Makefile
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 base/modules/psb_hash_map_mod.f90
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 docs/src/biblio.tex
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 docs/src/intro.tex
 test/fileread/df_sample.f90
 test/fileread/runs/dfs.inp
 test/pargen/ppde.f90
 test/pargen/spde.f90

1. Worked on documentation.
2. Fixed performance problem with gen_block_map: changed to use a hash
internally. 
3. Changed ppde to implement a convection-diffusion problem with
centered differences.
This commit is contained in:
Salvatore Filippone
2012-02-11 11:57:43 +00:00
parent 52714393a0
commit b0e6f32827
279 changed files with 20418 additions and 20328 deletions
+119 -129
View File
@@ -7,8 +7,8 @@ original version by: Nikos Drakos, CBLU, University of Leeds
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<H2><A NAME="SECTION000130000000000000000">
Bibliography</A>
</H2><DL COMPACT><DD><P></P><DT><A NAME="DesPat:11">1</A>
<DD>
D.&nbsp;Barbieri, V.&nbsp;Cardellini, S.&nbsp;Filippone and D.&nbsp;Rouson
<EM>Design Patterns for Scientific Computations on Sparse Matrices</EM>,
HPSS 2011, Algorithms and Programming Tools for Next-Generation High-Performance Scientific Software, Bordeaux, Sep. 2011
<H2><A NAME="SECTION000102000000000000000">
hb_write -- Write a sparse matrix to a file
in the Harwell-Boeing format</A>
</H2>
<P>
<P></P><DT><A NAME="PARA04FOREST">2</A>
<PRE>
call hb_write(a, iret, iunit, filename, key, rhs, mtitle)
</PRE>
<P>
<DL>
<DT><STRONG>Type:</STRONG></DT>
<DD>Asynchronous.
</DD>
<DT><STRONG><B>On Entry </B></STRONG></DT>
<DD>
G.&nbsp;Bella, S.&nbsp;Filippone, A.&nbsp;De Maio and M.&nbsp;Testa,
<EM>A Simulation Model for Forest Fires</EM>,
in J.&nbsp;Dongarra, K.&nbsp;Madsen, J.&nbsp;Wasniewski, editors,
Proceedings of PARA&nbsp;04 Workshop on State of the Art
in Scientific Computing, pp.&nbsp;546-553, Lecture Notes in Computer Science,
Springer, 2005.
<P></P><DT><A NAME="2007d">3</A>
<DD> A. Buttari, D. di Serafino, P. D'Ambra, S. Filippone,<BR>
2LEV-D2P4: a package of high-performance preconditioners,<BR>
Applicable Algebra in Engineering, Communications and Computing,
Volume 18, Number 3, May, 2007, pp. 223-239
<P></P><DT><A NAME="2007c">4</A>
<DD> P. D'Ambra, S. Filippone, D. Di Serafino<BR>
On the Development of PSBLAS-based Parallel Two-level Schwarz Preconditioners
</DD>
<DT><STRONG>a</STRONG></DT>
<DD>the sparse matrix to be written.
<BR>
Applied Numerical Mathematics, Elsevier Science,
Volume 57, Issues 11-12, November-December 2007, Pages 1181-1196.
<P>
<P></P><DT><A NAME="BLAS2">5</A>
<DD>
Dongarra, J. J., DuCroz, J., Hammarling, S. and Hanson, R.,
An Extended Set of Fortran Basic Linear Algebra Subprograms,
ACM Trans. Math. Softw. vol.&nbsp;14, 1-17, 1988.
<P></P><DT><A NAME="BLAS3">6</A>
<DD>
Dongarra, J., DuCroz, J., Hammarling, S. and Duff, I.,
A Set of level 3 Basic Linear Algebra Subprograms,
ACM Trans. Math. Softw. vol.&nbsp;16, 1-17, 1990.
<P></P><DT><A NAME="BLACS">7</A>
<DD>
J.&nbsp;J.&nbsp;Dongarra and R.&nbsp;C.&nbsp;Whaley,
<EM>A User's Guide to the BLACS v.&nbsp;1.1</EM>,
Lapack Working Note 94, Tech. Rep. UT-CS-95-281, University of
Tennessee, March 1995 (updated May 1997).
<P></P><DT><A NAME="sblas97">8</A>
<DD>
I.&nbsp;Duff, M.&nbsp;Marrone, G.&nbsp;Radicati and C.&nbsp;Vittoli,
<EM>Level 3 Basic Linear Algebra Subprograms for Sparse Matrices:
a User Level Interface</EM>,
ACM Transactions on Mathematical Software, 23(3), pp.&nbsp;379-401, 1997.
<P></P><DT><A NAME="sblas02">9</A>
<DD>
I.&nbsp;Duff, M.&nbsp;Heroux and R.&nbsp;Pozo,
<EM>An Overview of the Sparse Basic Linear
Algebra Subprograms: the New Standard from the BLAS Technical Forum</EM>,
ACM Transactions on Mathematical Software, 28(2), pp.&nbsp;239-267, 2002.
<P></P><DT><A NAME="PSBLAS">10</A>
<DD>
S.&nbsp;Filippone and M.&nbsp;Colajanni,
<EM>PSBLAS: A Library for Parallel Linear Algebra
Computation on Sparse Matrices</EM>,
Type:<B>required</B>.
<BR>
ACM Transactions on Mathematical Software, 26(4), pp.&nbsp;527-550, 2000.
<P></P><DT><A NAME="Sparse03">11</A>
<DD>
S.&nbsp;Filippone and A.&nbsp;Buttari,
<EM>Object-Oriented Techniques for Sparse Matrix Computations in Fortran 2003</EM>,
Specified as: a structured data of type spdata<TT>psb_spmat_type</TT>.
</DD>
<DT><STRONG>b</STRONG></DT>
<DD>Rigth hand side.
<BR>
ACM Transactions on Mathematical Software, to appear.
<P></P><DT><A NAME="KIVA3PSBLAS">12</A>
<DD>
S.&nbsp;Filippone, P.&nbsp;D'Ambra, M.&nbsp;Colajanni,
<EM>Using a Parallel Library of Sparse Linear Algebra in a Fluid Dynamics
Applications Code on Linux Clusters</EM>,
in G.&nbsp;Joubert, A.&nbsp;Murli, F.&nbsp;Peters, M.&nbsp;Vanneschi, editors,
Parallel Computing - Advances &amp; Current Issues,
pp.&nbsp;441-448, Imperial College Press, 2002.
<P></P><DT><A NAME="METIS">13</A>
<DD>
Karypis, G. and Kumar, V.,
<EM>METIS: Unstructured Graph Partitioning and Sparse Matrix
Ordering System</EM>.
Minneapolis, MN 55455: University of Minnesota, Department of
Computer Science, 1995.
Internet Address: <code>http://www.cs.umn.edu/~karypis</code>.
<P></P><DT><A NAME="BLAS1">14</A>
<DD>
Lawson, C., Hanson, R., Kincaid, D. and Krogh, F.,
Basic Linear Algebra Subprograms for Fortran usage,
ACM Trans. Math. Softw. vol.&nbsp;5, 38-329, 1979.
<P>
<P></P><DT><A NAME="machiels">15</A>
<DD>
Machiels, L. and Deville, M.
<EM>Fortran 90: An entry to object-oriented programming for the solution
of partial differential equations.</EM>
ACM Trans. Math. Softw. vol.&nbsp;23, 32-49.
<P></P><DT><A NAME="metcalf">16</A>
<DD>
Metcalf, M., Reid, J. and Cohen, M.
<EM>Fortran 95/2003 explained.</EM>
Oxford University Press, 2004.
<P></P><DT><A NAME="RouXiaXu:11">17</A>
<DD>
Rouson, D.W.I., Xia, J., Xu, X.: Scientific Software Design: The
Object-Oriented Way. Cambridge University Press (2011)
<P>
<P></P><DT><A NAME="MPI1">18</A>
<DD>
M.&nbsp;Snir, S.&nbsp;Otto, S.&nbsp;Huss-Lederman, D.&nbsp;Walker and J.&nbsp;Dongarra,
<EM>MPI: The Complete Reference. Volume 1 - The MPI Core</EM>, second edition,
MIT Press, 1998.
Type: <B>Optional</B>
<BR>
An array of type real or complex, rank 1 and having the ALLOCATABLE
attribute; will be allocated and filled in if the input file contains
a right hand side.
</DD>
<DT><STRONG>filename</STRONG></DT>
<DD>The name of the file to be written to.
<BR>
Type:<B>optional</B>.
<BR>
Specified as: a character variable containing a valid file name, or
<code>-</code>, in which case the default output unit 6 (i.e. standard output
in Unix jargon) is used. Default: <code>-</code>.
</DD>
<DT><STRONG>iunit</STRONG></DT>
<DD>The Fortran file unit number.
<BR>
Type:<B>optional</B>.
<BR>
Specified as: an integer value. Only meaningful if filename is not <code>-</code>.
</DD>
<DT><STRONG>key</STRONG></DT>
<DD>Matrix key.
<BR>
Type: <B>Optional</B>
<BR>
A charachter variable of length 8 holding the
matrix key as specified by the Harwell-Boeing format and to be
written to file.
</DD>
<DT><STRONG>mtitle</STRONG></DT>
<DD>Matrix title.
<BR>
Type: <B>Optional</B>
<BR>
A charachter variable of length 72 holding the
matrix title as specified by the Harwell-Boeing format and to be
written to file.
</DD>
</DL>
<P>
<BR><HR>
<DL>
<DT><STRONG><B>On Return</B></STRONG></DT>
<DD>
</DD>
<DT><STRONG>iret</STRONG></DT>
<DD>Error code.
<BR>
Type: <B>required</B>
<BR>
An integer value; 0 means no error has been detected.
</DD>
</DL>
<P>
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