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[FIX] FIxed cmake for CI using workflows

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test_dev
Stack-1 7 months ago
parent 0065674e93 f0e6592275
commit c525a35a82
1 changed files with 85 additions and 57 deletions
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142
CMakeLists.txt
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@ -61,7 +61,7 @@ include(CheckOutOfSourceBuild)
#----------------------------------------------------
if ("${CMAKE_Fortran_COMPILER_ID}" MATCHES "GNU" )
set(gfortran_compiler true)
#TODO: check if it is needed an mpi compiler set(CMAKE_Fortran_COMPILER mpifort)
set(CMAKE_Fortran_COMPILER mpifort)
set ( CMAKE_C_FLAGS_CODECOVERAGE "-fprofile-arcs -ftest-coverage -O0"
CACHE STRING "Code coverage C compiler flags")
@ -306,62 +306,90 @@ if(HAVE_SAME_TYPE_AS)
endif()
#----------------------------------------------------------------------------
# Find MPI and set some flags so that FC and CC can point to gfortran and gcc
# MPI detection and configuration
#----------------------------------------------------------------------------
find_package( MPI REQUIRED Fortran )
find_package(MPI REQUIRED Fortran)
if(MPI_FOUND)
message(STATUS ">>> MPI found: ${MPI_C_LIBRARIES} ${MPI_Fortran_LIBRARIES}")
#-----------------------------------------------
# Work around an issue present on fedora systems
# Fedora-specific workaround for noexecstack flag
#-----------------------------------------------
if( (MPI_C_LINK_FLAGS MATCHES "noexecstack") OR (MPI_Fortran_LINK_FLAGS MATCHES "noexecstack") )
message ( WARNING
"The `noexecstack` linker flag was found in the MPI_<lang>_LINK_FLAGS variable. This is
known to cause segmentation faults for some Fortran codes. See, e.g.,
https://gcc.gnu.org/bugzilla/show_bug.cgi?id=71729 or
https://github.com/sourceryinstitute/OpenCoarrays/issues/317.
`noexecstack` is being replaced with `execstack`"
)
string(REPLACE "noexecstack"
"execstack" MPI_C_LINK_FLAGS_FIXED ${MPI_C_LINK_FLAGS})
string(REPLACE "noexecstack"
"execstack" MPI_Fortran_LINK_FLAGS_FIXED ${MPI_Fortran_LINK_FLAGS})
set(MPI_C_LINK_FLAGS "${MPI_C_LINK_FLAGS_FIXED}" CACHE STRING
"MPI C linking flags" FORCE)
set(MPI_Fortran_LINK_FLAGS "${MPI_Fortran_LINK_FLAGS_FIXED}" CACHE STRING
"MPI Fortran linking flags" FORCE)
if((MPI_C_LINK_FLAGS MATCHES "noexecstack") OR (MPI_Fortran_LINK_FLAGS MATCHES "noexecstack"))
message(WARNING
"The `noexecstack` linker flag was found in the MPI_<lang>_LINK_FLAGS variable.
This can cause segmentation faults in Fortran codes.
Replacing `noexecstack` with `execstack`."
)
string(REPLACE "noexecstack" "execstack" MPI_C_LINK_FLAGS_FIXED ${MPI_C_LINK_FLAGS})
string(REPLACE "noexecstack" "execstack" MPI_Fortran_LINK_FLAGS_FIXED ${MPI_Fortran_LINK_FLAGS})
set(MPI_C_LINK_FLAGS "${MPI_C_LINK_FLAGS_FIXED}" CACHE STRING "MPI C linking flags" FORCE)
set(MPI_Fortran_LINK_FLAGS "${MPI_Fortran_LINK_FLAGS_FIXED}" CACHE STRING "MPI Fortran linking flags" FORCE)
endif()
message(STATUS "Found MPI: ${MPI_C_LIBRARIES} ${MPI_Fortran_LIBRARIES}")
#----------------
# Setup MPI flags
#----------------
#-----------------------------------------------
# Compiler and linker flags setup
#-----------------------------------------------
list(REMOVE_DUPLICATES MPI_Fortran_INCLUDE_PATH)
set(CMAKE_C_COMPILE_FLAGS ${CMAKE_C_COMPILE_FLAGS} ${MPI_C_COMPILE_FLAGS})
set(CMAKE_C_LINK_FLAGS ${CMAKE_C_LINK_FLAGS} ${MPI_C_LINK_FLAGS})
set(CMAKE_Fortran_COMPILE_FLAGS ${CMAKE_Fortran_COMPILE_FLAGS} ${MPI_Fortran_COMPILE_FLAGS})
set(CMAKE_Fortran_LINK_FLAGS ${CMAKE_Fortran_LINK_FLAGS} ${MPI_Fortran_LINK_FLAGS})
include_directories(BEFORE ${MPI_C_INCLUDE_PATH} ${MPI_Fortran_INCLUDE_PATH})
message(STATUS "${MPI_C_INCLUDE_PATH}; ${MPI_Fortran_INCLUDE_PATH};; ${CMAKE_Fortran_LINK_FLAGS} ;")
set(CMAKE_C_COMPILE_FLAGS "${CMAKE_C_COMPILE_FLAGS} ${MPI_C_COMPILE_FLAGS}")
set(CMAKE_C_LINK_FLAGS "${CMAKE_C_LINK_FLAGS} ${MPI_C_LINK_FLAGS}")
set(CMAKE_Fortran_COMPILE_FLAGS "${CMAKE_Fortran_COMPILE_FLAGS} ${MPI_Fortran_COMPILE_FLAGS}")
set(CMAKE_Fortran_LINK_FLAGS "${CMAKE_Fortran_LINK_FLAGS} ${MPI_Fortran_LINK_FLAGS}")
message(STATUS "MPI include paths: ${MPI_Fortran_INCLUDE_PATH}")
message(STATUS "Fortran link flags: ${CMAKE_Fortran_LINK_FLAGS}")
#-----------------------------------------------
# Ensure mpi.mod is available for CMake
#-----------------------------------------------
set(CMAKE_Fortran_MODULE_DIRECTORY ${CMAKE_BINARY_DIR}/modules)
file(MAKE_DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY})
# Try to copy mpi.mod or MPI.mod into module directory
set(_mpi_mod_found FALSE)
foreach(_mpi_mod_name mpi.mod MPI.mod)
foreach(_mpi_inc ${MPI_Fortran_INCLUDE_PATH})
if(EXISTS "${_mpi_inc}/${_mpi_mod_name}")
file(COPY "${_mpi_inc}/${_mpi_mod_name}" DESTINATION "${CMAKE_Fortran_MODULE_DIRECTORY}")
message(STATUS "Copied ${_mpi_mod_name} from ${_mpi_inc}")
set(_mpi_mod_found TRUE)
break()
endif()
endforeach()
if(_mpi_mod_found)
break()
endif()
endforeach()
if(NOT _mpi_mod_found)
message(WARNING "mpi.mod not found in MPI include paths; assuming it is built-in to mpifort.")
endif()
#-----------------------------------------------
# Enable MPI Fortran module support
#-----------------------------------------------
if(MPI_Fortran_HAVE_F90_MODULE OR MPI_Fortran_HAVE_F08_MODULE)
add_compile_options(-DPSB_MPI_MOD)
message(STATUS "-DPSB_MPI_MOD")
#add_compile_options(-DSERIAL_MPI) # Is it right??
#message(STATUS "-DSERIAL_MPI")
message(STATUS "Defined: -DPSB_MPI_MOD")
endif()
set(PSB_SERIAL_MPI OFF)
else()
message(STATUS "MPI not found, serial ahead")
add_compile_options(-DPSB_SERIAL_MPI)
add_compile_options(-DPSB_MPI_MOD)
#-----------------------------------------------
# Fallback to serial mode (no MPI found)
#-----------------------------------------------
message(WARNING ">>> MPI not found — building in serial mode")
add_compile_options(-DPSB_SERIAL_MPI -DPSB_MPI_MOD)
set(PSB_SERIAL_MPI ON)
set(CSERIALMPI "#define PSB_SERIAL_MPI")
endif()
#-------------------------------------------------------
# Find and Use OpenCoarrays IFF gfortran AND options set
#-------------------------------------------------------
@ -1122,35 +1150,35 @@ endif()
if(MPI_FOUND)
#if(MPI_FOUND)
# Copy mpi.mod from the first available path in MPI_Fortran_INCLUDE_PATH
set(MPI_MOD_COPIED FALSE)
# set(MPI_MOD_COPIED FALSE)
foreach(path IN LISTS MPI_Fortran_INCLUDE_PATH)
# foreach(path IN LISTS MPI_Fortran_INCLUDE_PATH)
# Construct the full path to the mpi.mod file
set(mpi_mod_path "${path}/mpi.mod")
# set(mpi_mod_path "${path}/mpi.mod")
# Check if the mpi.mod file exists
if(EXISTS "${mpi_mod_path}")
# if(EXISTS "${mpi_mod_path}")
# Copy the mpi.mod file to the module directory
file(COPY "${mpi_mod_path}" DESTINATION "${CMAKE_Fortran_MODULE_DIRECTORY}")
message(STATUS "Copied mpi.mod from ${mpi_mod_path} to ${CMAKE_Fortran_MODULE_DIRECTORY}")
set(MPI_MOD_COPIED TRUE)
break() # Exit the loop once we've copied the file
endif()
endforeach()
# file(COPY "${mpi_mod_path}" DESTINATION "${CMAKE_Fortran_MODULE_DIRECTORY}")
#message(STATUS "Copied mpi.mod from ${mpi_mod_path} to ${CMAKE_Fortran_MODULE_DIRECTORY}")
#set(MPI_MOD_COPIED TRUE)
#break() # Exit the loop once we've copied the file
#endif()
#endforeach()
if(NOT MPI_MOD_COPIED)
message(WARNING "mpi.mod not found in any of the specified paths: ${MPI_Fortran_INCLUDE_PATH}")
endif()
#if(NOT MPI_MOD_COPIED)
# message(WARNING "mpi.mod not found in any of the specified paths: ${MPI_Fortran_INCLUDE_PATH}")
#endif()
foreach(lib base prec linsolve ext util cbind)
#foreach(lib base prec linsolve ext util cbind)
target_link_libraries(${lib} PUBLIC ${MPI_C_LIBRARIES} ${MPI_Fortran_LIBRARIES})
endforeach()
endif()
# target_link_libraries(${lib} PUBLIC ${MPI_C_LIBRARIES} ${MPI_Fortran_LIBRARIES})
#endforeach()
#endif()
if(OpenCoarrays_FOUND)
foreach(lib base prec linsolve ext util cbind) #TODO: check if cbind goes here!

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