From 003b3fd75ddbaf3dbf3adbe4a785ce05614fd886 Mon Sep 17 00:00:00 2001 From: Salvatore Filippone Date: Thu, 2 Jul 2020 10:40:03 +0200 Subject: [PATCH 1/7] Update version message in configure --- configure | 324 +++++++++++++++++++++++++++++++++------------------ configure.ac | 4 +- 2 files changed, 215 insertions(+), 113 deletions(-) diff --git a/configure b/configure index 727f56c3..0ab9494a 100755 --- a/configure +++ b/configure @@ -1,6 +1,6 @@ #! /bin/sh # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.69 for PSBLAS 3.5. +# Generated by GNU Autoconf 2.69 for PSBLAS 3.7. # # Report bugs to . # @@ -580,8 +580,8 @@ MAKEFLAGS= # Identity of this package. PACKAGE_NAME='PSBLAS' PACKAGE_TARNAME='psblas' -PACKAGE_VERSION='3.5' -PACKAGE_STRING='PSBLAS 3.5' +PACKAGE_VERSION='3.7' +PACKAGE_STRING='PSBLAS 3.7' PACKAGE_BUGREPORT='https://github.com/sfilippone/psblas3/issues' PACKAGE_URL='' @@ -676,7 +676,6 @@ am__nodep AMDEPBACKSLASH AMDEP_FALSE AMDEP_TRUE -am__quote am__include DEPDIR am__untar @@ -753,7 +752,8 @@ PACKAGE_VERSION PACKAGE_TARNAME PACKAGE_NAME PATH_SEPARATOR -SHELL' +SHELL +am__quote' ac_subst_files='' ac_user_opts=' enable_option_checking @@ -1336,7 +1336,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures PSBLAS 3.5 to adapt to many kinds of systems. +\`configure' configures PSBLAS 3.7 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1402,7 +1402,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of PSBLAS 3.5:";; + short | recursive ) echo "Configuration of PSBLAS 3.7:";; esac cat <<\_ACEOF @@ -1544,7 +1544,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -PSBLAS configure 3.5 +PSBLAS configure 3.7 generated by GNU Autoconf 2.69 Copyright (C) 2012 Free Software Foundation, Inc. @@ -2180,7 +2180,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by PSBLAS $as_me 3.5, which was +It was created by PSBLAS $as_me 3.7, which was generated by GNU Autoconf 2.69. Invocation command line was $ $0 $@ @@ -2531,7 +2531,7 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu # VERSION is the file containing the PSBLAS version code # FIXME -psblas_cv_version="3.5" +psblas_cv_version="3.7" # A sample source file @@ -3515,6 +3515,68 @@ ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_c_compiler_gnu +# Expand $ac_aux_dir to an absolute path. +am_aux_dir=`cd "$ac_aux_dir" && pwd` + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $CC understands -c and -o together" >&5 +$as_echo_n "checking whether $CC understands -c and -o together... " >&6; } +if ${am_cv_prog_cc_c_o+:} false; then : + $as_echo_n "(cached) " >&6 +else + cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF + # Make sure it works both with $CC and with simple cc. + # Following AC_PROG_CC_C_O, we do the test twice because some + # compilers refuse to overwrite an existing .o file with -o, + # though they will create one. + am_cv_prog_cc_c_o=yes + for am_i in 1 2; do + if { echo "$as_me:$LINENO: $CC -c conftest.$ac_ext -o conftest2.$ac_objext" >&5 + ($CC -c conftest.$ac_ext -o conftest2.$ac_objext) >&5 2>&5 + ac_status=$? + echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } \ + && test -f conftest2.$ac_objext; then + : OK + else + am_cv_prog_cc_c_o=no + break + fi + done + rm -f core conftest* + unset am_i +fi +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $am_cv_prog_cc_c_o" >&5 +$as_echo "$am_cv_prog_cc_c_o" >&6; } +if test "$am_cv_prog_cc_c_o" != yes; then + # Losing compiler, so override with the script. + # FIXME: It is wrong to rewrite CC. + # But if we don't then we get into trouble of one sort or another. + # A longer-term fix would be to have automake use am__CC in this case, + # and then we could set am__CC="\$(top_srcdir)/compile \$(CC)" + CC="$am_aux_dir/compile $CC" +fi +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + CFLAGS="$save_CFLAGS"; @@ -4942,7 +5004,7 @@ else fi -am__api_version='1.13' +am__api_version='1.16' { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether build environment is sane" >&5 $as_echo_n "checking whether build environment is sane... " >&6; } @@ -5021,9 +5083,6 @@ test "$program_suffix" != NONE && ac_script='s/[\\$]/&&/g;s/;s,x,x,$//' program_transform_name=`$as_echo "$program_transform_name" | sed "$ac_script"` -# expand $ac_aux_dir to an absolute path -am_aux_dir=`cd $ac_aux_dir && pwd` - if test x"${MISSING+set}" != xset; then case $am_aux_dir in *\ * | *\ *) @@ -5041,7 +5100,7 @@ else $as_echo "$as_me: WARNING: 'missing' script is too old or missing" >&2;} fi -if test x"${install_sh}" != xset; then +if test x"${install_sh+set}" != xset; then case $am_aux_dir in *\ * | *\ *) install_sh="\${SHELL} '$am_aux_dir/install-sh'" ;; @@ -5278,45 +5337,45 @@ DEPDIR="${am__leading_dot}deps" ac_config_commands="$ac_config_commands depfiles" - -am_make=${MAKE-make} -cat > confinc << 'END' +{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether ${MAKE-make} supports the include directive" >&5 +$as_echo_n "checking whether ${MAKE-make} supports the include directive... " >&6; } +cat > confinc.mk << 'END' am__doit: - @echo this is the am__doit target + @echo this is the am__doit target >confinc.out .PHONY: am__doit END -# If we don't find an include directive, just comment out the code. -{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for style of include used by $am_make" >&5 -$as_echo_n "checking for style of include used by $am_make... " >&6; } am__include="#" am__quote= -_am_result=none -# First try GNU make style include. -echo "include confinc" > confmf -# Ignore all kinds of additional output from 'make'. -case `$am_make -s -f confmf 2> /dev/null` in #( -*the\ am__doit\ target*) - am__include=include - am__quote= - _am_result=GNU - ;; -esac -# Now try BSD make style include. -if test "$am__include" = "#"; then - echo '.include "confinc"' > confmf - case `$am_make -s -f confmf 2> /dev/null` in #( - *the\ am__doit\ target*) - am__include=.include - am__quote="\"" - _am_result=BSD +# BSD make does it like this. +echo '.include "confinc.mk" # ignored' > confmf.BSD +# Other make implementations (GNU, Solaris 10, AIX) do it like this. +echo 'include confinc.mk # ignored' > confmf.GNU +_am_result=no +for s in GNU BSD; do + { echo "$as_me:$LINENO: ${MAKE-make} -f confmf.$s && cat confinc.out" >&5 + (${MAKE-make} -f confmf.$s && cat confinc.out) >&5 2>&5 + ac_status=$? + echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } + case $?:`cat confinc.out 2>/dev/null` in #( + '0:this is the am__doit target') : + case $s in #( + BSD) : + am__include='.include' am__quote='"' ;; #( + *) : + am__include='include' am__quote='' ;; +esac ;; #( + *) : ;; - esac -fi - - -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $_am_result" >&5 -$as_echo "$_am_result" >&6; } -rm -f confinc confmf +esac + if test "$am__include" != "#"; then + _am_result="yes ($s style)" + break + fi +done +rm -f confinc.* confmf.* +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: ${_am_result}" >&5 +$as_echo "${_am_result}" >&6; } # Check whether --enable-dependency-tracking was given. if test "${enable_dependency_tracking+set}" = set; then : @@ -5398,7 +5457,7 @@ fi # Define the identity of the package. PACKAGE='psblas' - VERSION='3.5' + VERSION='3.7' cat >>confdefs.h <<_ACEOF @@ -5428,12 +5487,12 @@ MAKEINFO=${MAKEINFO-"${am_missing_run}makeinfo"} # For better backward compatibility. To be removed once Automake 1.9.x # dies out for good. For more background, see: -# -# +# +# mkdir_p='$(MKDIR_P)' -# We need awk for the "check" target. The system "awk" is bad on -# some platforms. +# We need awk for the "check" target (and possibly the TAP driver). The +# system "awk" is bad on some platforms. # Always define AMTAR for backward compatibility. Yes, it's still used # in the wild :-( We should find a proper way to deprecate it ... AMTAR='$${TAR-tar}' @@ -5577,6 +5636,48 @@ fi +# POSIX will say in a future version that running "rm -f" with no argument +# is OK; and we want to be able to make that assumption in our Makefile +# recipes. So use an aggressive probe to check that the usage we want is +# actually supported "in the wild" to an acceptable degree. +# See automake bug#10828. +# To make any issue more visible, cause the running configure to be aborted +# by default if the 'rm' program in use doesn't match our expectations; the +# user can still override this though. +if rm -f && rm -fr && rm -rf; then : OK; else + cat >&2 <<'END' +Oops! + +Your 'rm' program seems unable to run without file operands specified +on the command line, even when the '-f' option is present. This is contrary +to the behaviour of most rm programs out there, and not conforming with +the upcoming POSIX standard: + +Please tell bug-automake@gnu.org about your system, including the value +of your $PATH and any error possibly output before this message. This +can help us improve future automake versions. + +END + if test x"$ACCEPT_INFERIOR_RM_PROGRAM" = x"yes"; then + echo 'Configuration will proceed anyway, since you have set the' >&2 + echo 'ACCEPT_INFERIOR_RM_PROGRAM variable to "yes"' >&2 + echo >&2 + else + cat >&2 <<'END' +Aborting the configuration process, to ensure you take notice of the issue. + +You can download and install GNU coreutils to get an 'rm' implementation +that behaves properly: . + +If you want to complete the configuration process using your problematic +'rm' anyway, export the environment variable ACCEPT_INFERIOR_RM_PROGRAM +to "yes", and re-run configure. + +END + as_fn_error $? "Your 'rm' program is bad, sorry." "$LINENO" 5 + fi +fi + @@ -9872,7 +9973,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by PSBLAS $as_me 3.5, which was +This file was extended by PSBLAS $as_me 3.7, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -9929,7 +10030,7 @@ _ACEOF cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ac_cs_version="\\ -PSBLAS config.status 3.5 +PSBLAS config.status 3.7 configured by $0, generated by GNU Autoconf 2.69, with options \\"\$ac_cs_config\\" @@ -10037,7 +10138,7 @@ cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 # # INIT-COMMANDS # -AMDEP_TRUE="$AMDEP_TRUE" ac_aux_dir="$ac_aux_dir" +AMDEP_TRUE="$AMDEP_TRUE" MAKE="${MAKE-make}" _ACEOF @@ -10482,29 +10583,35 @@ $as_echo "$as_me: executing $ac_file commands" >&6;} # Older Autoconf quotes --file arguments for eval, but not when files # are listed without --file. Let's play safe and only enable the eval # if we detect the quoting. - case $CONFIG_FILES in - *\'*) eval set x "$CONFIG_FILES" ;; - *) set x $CONFIG_FILES ;; - esac + # TODO: see whether this extra hack can be removed once we start + # requiring Autoconf 2.70 or later. + case $CONFIG_FILES in #( + *\'*) : + eval set x "$CONFIG_FILES" ;; #( + *) : + set x $CONFIG_FILES ;; #( + *) : + ;; +esac shift - for mf + # Used to flag and report bootstrapping failures. + am_rc=0 + for am_mf do # Strip MF so we end up with the name of the file. - mf=`echo "$mf" | sed -e 's/:.*$//'` - # Check whether this is an Automake generated Makefile or not. - # We used to match only the files named 'Makefile.in', but - # some people rename them; so instead we look at the file content. - # Grep'ing the first line is not enough: some people post-process - # each Makefile.in and add a new line on top of each file to say so. - # Grep'ing the whole file is not good either: AIX grep has a line + am_mf=`$as_echo "$am_mf" | sed -e 's/:.*$//'` + # Check whether this is an Automake generated Makefile which includes + # dependency-tracking related rules and includes. + # Grep'ing the whole file directly is not great: AIX grep has a line # limit of 2048, but all sed's we know have understand at least 4000. - if sed -n 's,^#.*generated by automake.*,X,p' "$mf" | grep X >/dev/null 2>&1; then - dirpart=`$as_dirname -- "$mf" || -$as_expr X"$mf" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \ - X"$mf" : 'X\(//\)[^/]' \| \ - X"$mf" : 'X\(//\)$' \| \ - X"$mf" : 'X\(/\)' \| . 2>/dev/null || -$as_echo X"$mf" | + sed -n 's,^am--depfiles:.*,X,p' "$am_mf" | grep X >/dev/null 2>&1 \ + || continue + am_dirpart=`$as_dirname -- "$am_mf" || +$as_expr X"$am_mf" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \ + X"$am_mf" : 'X\(//\)[^/]' \| \ + X"$am_mf" : 'X\(//\)$' \| \ + X"$am_mf" : 'X\(/\)' \| . 2>/dev/null || +$as_echo X"$am_mf" | sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/ q @@ -10522,53 +10629,48 @@ $as_echo X"$mf" | q } s/.*/./; q'` - else - continue - fi - # Extract the definition of DEPDIR, am__include, and am__quote - # from the Makefile without running 'make'. - DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"` - test -z "$DEPDIR" && continue - am__include=`sed -n 's/^am__include = //p' < "$mf"` - test -z "$am__include" && continue - am__quote=`sed -n 's/^am__quote = //p' < "$mf"` - # Find all dependency output files, they are included files with - # $(DEPDIR) in their names. We invoke sed twice because it is the - # simplest approach to changing $(DEPDIR) to its actual value in the - # expansion. - for file in `sed -n " - s/^$am__include $am__quote\(.*(DEPDIR).*\)$am__quote"'$/\1/p' <"$mf" | \ - sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g'`; do - # Make sure the directory exists. - test -f "$dirpart/$file" && continue - fdir=`$as_dirname -- "$file" || -$as_expr X"$file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \ - X"$file" : 'X\(//\)[^/]' \| \ - X"$file" : 'X\(//\)$' \| \ - X"$file" : 'X\(/\)' \| . 2>/dev/null || -$as_echo X"$file" | - sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ - s//\1/ - q - } - /^X\(\/\/\)[^/].*/{ + am_filepart=`$as_basename -- "$am_mf" || +$as_expr X/"$am_mf" : '.*/\([^/][^/]*\)/*$' \| \ + X"$am_mf" : 'X\(//\)$' \| \ + X"$am_mf" : 'X\(/\)' \| . 2>/dev/null || +$as_echo X/"$am_mf" | + sed '/^.*\/\([^/][^/]*\)\/*$/{ s//\1/ q } - /^X\(\/\/\)$/{ + /^X\/\(\/\/\)$/{ s//\1/ q } - /^X\(\/\).*/{ + /^X\/\(\/\).*/{ s//\1/ q } s/.*/./; q'` - as_dir=$dirpart/$fdir; as_fn_mkdir_p - # echo "creating $dirpart/$file" - echo '# dummy' > "$dirpart/$file" - done + { echo "$as_me:$LINENO: cd "$am_dirpart" \ + && sed -e '/# am--include-marker/d' "$am_filepart" \ + | $MAKE -f - am--depfiles" >&5 + (cd "$am_dirpart" \ + && sed -e '/# am--include-marker/d' "$am_filepart" \ + | $MAKE -f - am--depfiles) >&5 2>&5 + ac_status=$? + echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); } || am_rc=$? done + if test $am_rc -ne 0; then + { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5 +$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} +as_fn_error $? "Something went wrong bootstrapping makefile fragments + for automatic dependency tracking. Try re-running configure with the + '--disable-dependency-tracking' option to at least be able to build + the package (albeit without support for automatic dependency tracking). +See \`config.log' for more details" "$LINENO" 5; } + fi + { am_dirpart=; unset am_dirpart;} + { am_filepart=; unset am_filepart;} + { am_mf=; unset am_mf;} + { am_rc=; unset am_rc;} + rm -f conftest-deps.mk } ;; diff --git a/configure.ac b/configure.ac index 18dbfdd3..59fcab0b 100755 --- a/configure.ac +++ b/configure.ac @@ -36,11 +36,11 @@ dnl NOTE : There is no cross compilation support. ############################################################################### # NOTE: the literal for version (the second argument to AC_INIT should be a literal!) -AC_INIT([PSBLAS],3.5, [https://github.com/sfilippone/psblas3/issues]) +AC_INIT([PSBLAS],3.7, [https://github.com/sfilippone/psblas3/issues]) # VERSION is the file containing the PSBLAS version code # FIXME -psblas_cv_version="3.5" +psblas_cv_version="3.7" # A sample source file AC_CONFIG_SRCDIR([base/modules/psb_base_mod.f90]) From 113a70f8c8ff4572bb34bb9a23ecf50412b2578d Mon Sep 17 00:00:00 2001 From: Salvatore Filippone Date: Tue, 7 Jul 2020 09:07:59 +0200 Subject: [PATCH 2/7] New configry for METIS: detect int width, set include file name --- config/pac.m4 | 25 ++++++++++++++++++++--- configure | 56 +++++++++++++++++++++++++++++++++++++++++++-------- configure.ac | 5 ----- 3 files changed, 70 insertions(+), 16 deletions(-) diff --git a/config/pac.m4 b/config/pac.m4 index 5dc4e0c5..0fd295f2 100644 --- a/config/pac.m4 +++ b/config/pac.m4 @@ -1792,6 +1792,9 @@ AC_DEFUN(PAC_CHECK_METIS, Default: "-lmetis"]), [psblas_cv_metis=$withval], [psblas_cv_metis='-lmetis']) +AC_ARG_WITH(metisincfile, AC_HELP_STRING([--with-metisincfile=DIR], [Specify the name for METIS include file.]), + [psblas_cv_metisincfile=$withval], + [psblas_cv_metisincfile='metis.h']) AC_ARG_WITH(metisdir, AC_HELP_STRING([--with-metisdir=DIR], [Specify the directory for METIS library and includes.]), [psblas_cv_metisdir=$withval], [psblas_cv_metisdir='']) @@ -1821,7 +1824,7 @@ if test "x$psblas_cv_metislibdir" != "x"; then fi AC_MSG_NOTICE([metis dir $psblas_cv_metisdir]) -AC_CHECK_HEADERS([limits.h metis.h], +AC_CHECK_HEADERS([limits.h $psblas_cv_metisincfile], [pac_metis_header_ok=yes], [pac_metis_header_ok=no; METIS_INCLUDES=""]) if test "x$pac_metis_header_ok" == "xno" ; then @@ -1831,7 +1834,7 @@ dnl Maybe Include or include subdirs? CPPFLAGS="$METIS_INCLUDES $SAVE_CPPFLAGS" AC_MSG_CHECKING([for metis_h in $METIS_INCLUDES]) - AC_CHECK_HEADERS([limits.h metis.h], + AC_CHECK_HEADERS([limits.h $psblas_cv_metisincfile], [pac_metis_header_ok=yes], [pac_metis_header_ok=no; METIS_INCLUDES=""]) fi @@ -1840,11 +1843,27 @@ dnl Maybe new structure with METIS UFconfig METIS? unset ac_cv_header_metis_h METIS_INCLUDES="-I$psblas_cv_metisdir/UFconfig -I$psblas_cv_metisdir/METIS/Include -I$psblas_cv_metisdir/METIS/Include" CPPFLAGS="$METIS_INCLUDES $SAVE_CPPFLAGS" - AC_CHECK_HEADERS([limits.h metis.h], + AC_CHECK_HEADERS([limits.h $psblas_cv_metisincfile], [pac_metis_header_ok=yes], [pac_metis_header_ok=no; METIS_INCLUDES=""]) fi +if test "x$pac_metis_header_ok" == "xyes" ; then + AC_LANG_PUSH([C]) + AC_MSG_CHECKING([for METIS idx size]) + AC_LINK_IFELSE([AC_LANG_SOURCE( + #include <$psblas_cv_metisincfile> + #include + void main(){ + printf("%d\n",IDXTYPEWIDTH); + } + )], + [pac_cv_metis_idx=`./conftest${ac_exeext} | sed 's/^ *//'`], + [pac_cv_metis_idx="unknown"]) + AC_MSG_RESULT($pac_cv_metis_idx) + + AC_LANG_POP() +fi if test "x$pac_metis_header_ok" == "xyes" ; then psblas_cv_metis_includes="$METIS_INCLUDES" diff --git a/configure b/configure index 0ab9494a..ea270b0d 100755 --- a/configure +++ b/configure @@ -775,6 +775,7 @@ with_blasdir with_lapack with_rsb with_metis +with_metisincfile with_metisdir with_metisincdir with_metislibdir @@ -1454,6 +1455,7 @@ Optional Packages: configure script invoke librsb-config) --with-metis=LIBNAME Specify the library name for METIS library. Default: "-lmetis" + --with-metisincfile=DIR Specify the name for METIS include file. --with-metisdir=DIR Specify the directory for METIS library and includes. --with-metisincdir=DIR Specify the directory for METIS includes. @@ -8857,6 +8859,14 @@ else fi +# Check whether --with-metisincfile was given. +if test "${with_metisincfile+set}" = set; then : + withval=$with_metisincfile; psblas_cv_metisincfile=$withval +else + psblas_cv_metisincfile='metis.h' +fi + + # Check whether --with-metisdir was given. if test "${with_metisdir+set}" = set; then : withval=$with_metisdir; psblas_cv_metisdir=$withval @@ -8906,7 +8916,7 @@ fi { $as_echo "$as_me:${as_lineno-$LINENO}: metis dir $psblas_cv_metisdir" >&5 $as_echo "$as_me: metis dir $psblas_cv_metisdir" >&6;} -for ac_header in limits.h metis.h +for ac_header in limits.h $psblas_cv_metisincfile do : as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh` ac_fn_c_check_header_mongrel "$LINENO" "$ac_header" "$as_ac_Header" "$ac_includes_default" @@ -8928,7 +8938,7 @@ if test "x$pac_metis_header_ok" == "xno" ; then { $as_echo "$as_me:${as_lineno-$LINENO}: checking for metis_h in $METIS_INCLUDES" >&5 $as_echo_n "checking for metis_h in $METIS_INCLUDES... " >&6; } - for ac_header in limits.h metis.h + for ac_header in limits.h $psblas_cv_metisincfile do : as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh` ac_fn_c_check_header_mongrel "$LINENO" "$ac_header" "$as_ac_Header" "$ac_includes_default" @@ -8948,7 +8958,7 @@ if test "x$pac_metis_header_ok" == "xno" ; then unset ac_cv_header_metis_h METIS_INCLUDES="-I$psblas_cv_metisdir/UFconfig -I$psblas_cv_metisdir/METIS/Include -I$psblas_cv_metisdir/METIS/Include" CPPFLAGS="$METIS_INCLUDES $SAVE_CPPFLAGS" - for ac_header in limits.h metis.h + for ac_header in limits.h $psblas_cv_metisincfile do : as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh` ac_fn_c_check_header_mongrel "$LINENO" "$ac_header" "$as_ac_Header" "$ac_includes_default" @@ -8965,6 +8975,41 @@ done fi +if test "x$pac_metis_header_ok" == "xyes" ; then + ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for METIS idx size" >&5 +$as_echo_n "checking for METIS idx size... " >&6; } + cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ +#include <$psblas_cv_metisincfile> + #include + void main(){ + printf("%d\n",IDXTYPEWIDTH); + } + +_ACEOF +if ac_fn_c_try_link "$LINENO"; then : + pac_cv_metis_idx=`./conftest${ac_exeext} | sed 's/^ *//'` +else + pac_cv_metis_idx="unknown" +fi +rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext + { $as_echo "$as_me:${as_lineno-$LINENO}: result: $pac_cv_metis_idx" >&5 +$as_echo "$pac_cv_metis_idx" >&6; } + + ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + +fi if test "x$pac_metis_header_ok" == "xyes" ; then psblas_cv_metis_includes="$METIS_INCLUDES" @@ -9319,11 +9364,6 @@ fi -# Note : We would like to detect PSBLAS, but this is complicated by the -# module symbols mangling rules, which are compiler specific ! -# -# Moreover, the PSBLAS doesn't have an installer, currently. - ############################################################################### # Library target directory and archive files. ############################################################################### diff --git a/configure.ac b/configure.ac index 59fcab0b..304abf99 100755 --- a/configure.ac +++ b/configure.ac @@ -702,11 +702,6 @@ fi -# Note : We would like to detect PSBLAS, but this is complicated by the -# module symbols mangling rules, which are compiler specific ! -# -# Moreover, the PSBLAS doesn't have an installer, currently. - ############################################################################### # Library target directory and archive files. ############################################################################### From 6e61e641a84cd9ad5c1588806527f5146a828505 Mon Sep 17 00:00:00 2001 From: Salvatore Filippone Date: Tue, 21 Jul 2020 11:45:19 +0200 Subject: [PATCH 3/7] Check index size of METIS add to DEFINES --- configure | 8 +++++--- configure.ac | 8 +++++--- 2 files changed, 10 insertions(+), 6 deletions(-) diff --git a/configure b/configure index ea270b0d..cfba49ad 100755 --- a/configure +++ b/configure @@ -9149,9 +9149,11 @@ fi LIBS="$SAVE_LIBS"; CPPFLAGS="$SAVE_CPPFLAGS"; -if test "x$psblas_cv_have_metis" == "xyes" ; then - FDEFINES="$psblas_cv_define_prepend-DHAVE_METIS $FDEFINES" - CDEFINES="-DHAVE_METIS_ $psblas_cv_metis_includes $CDEFINES" +if test "x$pac_cv_metis_idx" == "xunknown" ; then + true ; # do nothing +elif test "x$psblas_cv_have_metis" == "xyes" ; then + FDEFINES="$psblas_cv_define_prepend-DHAVE_METIS $psblas_cv_define_prepend-DMETIS_$pac_cv_metis_idx $FDEFINES" + CDEFINES="-DHAVE_METIS_ $psblas_cv_metis_includes $CDEFINES -DMETIS_$pac_cv_metis_idx" fi diff --git a/configure.ac b/configure.ac index 304abf99..64fbe596 100755 --- a/configure.ac +++ b/configure.ac @@ -689,9 +689,11 @@ LIBS="$RSB_LIBS ${LIBS}" dnl AC_CHECK_HEADERS([rsb.h], [ LIBS="${LIBS} $want_rsb_libs"], []) PAC_CHECK_METIS -if test "x$psblas_cv_have_metis" == "xyes" ; then - FDEFINES="$psblas_cv_define_prepend-DHAVE_METIS $FDEFINES" - CDEFINES="-DHAVE_METIS_ $psblas_cv_metis_includes $CDEFINES" +if test "x$pac_cv_metis_idx" == "xunknown" ; then + true ; # do nothing +elif test "x$psblas_cv_have_metis" == "xyes" ; then + FDEFINES="$psblas_cv_define_prepend-DHAVE_METIS $psblas_cv_define_prepend-DMETIS_$pac_cv_metis_idx $FDEFINES" + CDEFINES="-DHAVE_METIS_ $psblas_cv_metis_includes $CDEFINES -DMETIS_$pac_cv_metis_idx" fi PAC_CHECK_AMD From f268a411e86a951ba925997ed58a7087c1b76d3f Mon Sep 17 00:00:00 2001 From: Salvatore Filippone Date: Wed, 22 Jul 2020 10:17:06 +0200 Subject: [PATCH 4/7] Begin reworking Metis interface --- util/Makefile | 2 +- util/{metis_int.c => psb_metis_int.c} | 20 +++++++++++++++++++- 2 files changed, 20 insertions(+), 2 deletions(-) rename util/{metis_int.c => psb_metis_int.c} (77%) diff --git a/util/Makefile b/util/Makefile index 0f572e9c..3f2f3553 100644 --- a/util/Makefile +++ b/util/Makefile @@ -21,7 +21,7 @@ IMPLOBJS= psb_s_hbio_impl.o psb_d_hbio_impl.o \ psb_c_renum_impl.o psb_z_renum_impl.o psi_build_mtpart.o MODOBJS=psb_util_mod.o $(BASEOBJS) -COBJS=metis_int.o psb_amd_order.o +COBJS=psb_metis_int.o psb_amd_order.o OBJS=$(COBJS) $(MODOBJS) $(IMPLOBJS) LOCAL_MODS=$(MODOBJS:.o=$(.mod)) LIBNAME=$(UTILLIBNAME) diff --git a/util/metis_int.c b/util/psb_metis_int.c similarity index 77% rename from util/metis_int.c rename to util/psb_metis_int.c index b9d258b4..ad3abec9 100644 --- a/util/metis_int.c +++ b/util/psb_metis_int.c @@ -2,7 +2,25 @@ #if defined(HAVE_METIS_) #include "metis.h" -/* extern int METIS_PartGraphKway(int *, int *, int *, int *, int *, int *, int *, int *, float *, float, int *, int *, int *); */ +typedef int32_t psb_m_t; + +#if defined(IPK4) && defined(LPK4) +typedef int32_t psb_i_t; +typedef int32_t psb_l_t; +#elif defined(IPK4) && defined(LPK8) +typedef int32_t psb_i_t; +typedef int64_t psb_l_t; +#elif defined(IPK8) && defined(LPK8) +typedef int64_t psb_i_t; +typedef int64_t psb_l_t; +#else +#endif +typedef int64_t psb_e_t; + +typedef float psb_s_t; +typedef double psb_d_t; +typedef float complex psb_c_t; +typedef double complex psb_z_t; int metis_PartGraphKway_C(int *n, int *ixadj, int *iadj, int *ivwg, From 39d6bf01e0ac483d21c61c89a021c492db482be6 Mon Sep 17 00:00:00 2001 From: Salvatore Filippone Date: Thu, 23 Jul 2020 12:00:44 +0200 Subject: [PATCH 5/7] Reworked interface METISPART: use LPK matrix input. --- test/fileread/psb_cf_sample.f90 | 11 +-- test/fileread/psb_df_sample.f90 | 11 +-- test/fileread/psb_sf_sample.f90 | 11 +-- test/fileread/psb_zf_sample.f90 | 11 +-- util/Makefile | 2 +- util/psb_metis_int.c | 35 ++-------- util/psb_metispart_mod.F90 | 118 ++++++++++++++++---------------- util/psi_build_mtpart.F90 | 100 +++++++++++++++++++++------ 8 files changed, 174 insertions(+), 125 deletions(-) diff --git a/test/fileread/psb_cf_sample.f90 b/test/fileread/psb_cf_sample.f90 index 8170a446..699c4347 100644 --- a/test/fileread/psb_cf_sample.f90 +++ b/test/fileread/psb_cf_sample.f90 @@ -38,10 +38,11 @@ program psb_cf_sample implicit none ! input parameters - character(len=40) :: kmethd, ptype, mtrx_file, rhs_file,renum + character(len=40) :: kmethd, ptype, mtrx_file, rhs_file ! sparse matrices - type(psb_cspmat_type) :: a, aux_a + type(psb_cspmat_type) :: a + type(psb_lcspmat_type) :: aux_a ! preconditioner data type(psb_cprec_type) :: prec @@ -56,6 +57,7 @@ program psb_cf_sample type(psb_desc_type):: desc_a integer(psb_ipk_) :: ictxt, iam, np + integer(psb_lpk_) :: lnp ! solver paramters integer(psb_ipk_) :: iter, itmax, ierr, itrace, ircode,& @@ -140,7 +142,6 @@ program psb_cf_sample m_problem = aux_a%get_nrows() call psb_bcast(ictxt,m_problem) - call psb_mat_renum(psb_mat_renum_identity_,aux_a,info,perm) ! At this point aux_b may still be unallocated if (size(aux_b,dim=1) == m_problem) then @@ -180,7 +181,9 @@ program psb_cf_sample write(psb_out_unit,'("Partition type: graph vector")') write(psb_out_unit,'(" ")') ! write(psb_err_unit,'("Build type: graph")') - call build_mtpart(aux_a,np) + call aux_a%cscnv(info,type='csr') + lnp = np + call build_mtpart(aux_a,lnp) endif call psb_barrier(ictxt) diff --git a/test/fileread/psb_df_sample.f90 b/test/fileread/psb_df_sample.f90 index 17f821b3..8fbf8bc4 100644 --- a/test/fileread/psb_df_sample.f90 +++ b/test/fileread/psb_df_sample.f90 @@ -38,10 +38,11 @@ program psb_df_sample implicit none ! input parameters - character(len=40) :: kmethd, ptype, mtrx_file, rhs_file,renum + character(len=40) :: kmethd, ptype, mtrx_file, rhs_file ! sparse matrices - type(psb_dspmat_type) :: a, aux_a + type(psb_dspmat_type) :: a + type(psb_ldspmat_type) :: aux_a ! preconditioner data type(psb_dprec_type) :: prec @@ -56,6 +57,7 @@ program psb_df_sample type(psb_desc_type):: desc_a integer(psb_ipk_) :: ictxt, iam, np + integer(psb_lpk_) :: lnp ! solver paramters integer(psb_ipk_) :: iter, itmax, ierr, itrace, ircode,& @@ -140,7 +142,6 @@ program psb_df_sample m_problem = aux_a%get_nrows() call psb_bcast(ictxt,m_problem) - call psb_mat_renum(psb_mat_renum_identity_,aux_a,info,perm) ! At this point aux_b may still be unallocated if (size(aux_b,dim=1) == m_problem) then @@ -180,7 +181,9 @@ program psb_df_sample write(psb_out_unit,'("Partition type: graph vector")') write(psb_out_unit,'(" ")') ! write(psb_err_unit,'("Build type: graph")') - call build_mtpart(aux_a,np) + call aux_a%cscnv(info,type='csr') + lnp = np + call build_mtpart(aux_a,lnp) endif call psb_barrier(ictxt) diff --git a/test/fileread/psb_sf_sample.f90 b/test/fileread/psb_sf_sample.f90 index 05127088..71dd646b 100644 --- a/test/fileread/psb_sf_sample.f90 +++ b/test/fileread/psb_sf_sample.f90 @@ -38,10 +38,11 @@ program psb_sf_sample implicit none ! input parameters - character(len=40) :: kmethd, ptype, mtrx_file, rhs_file,renum + character(len=40) :: kmethd, ptype, mtrx_file, rhs_file ! sparse matrices - type(psb_sspmat_type) :: a, aux_a + type(psb_sspmat_type) :: a + type(psb_lsspmat_type) :: aux_a ! preconditioner data type(psb_sprec_type) :: prec @@ -56,6 +57,7 @@ program psb_sf_sample type(psb_desc_type):: desc_a integer(psb_ipk_) :: ictxt, iam, np + integer(psb_lpk_) :: lnp ! solver paramters integer(psb_ipk_) :: iter, itmax, ierr, itrace, ircode,& @@ -140,7 +142,6 @@ program psb_sf_sample m_problem = aux_a%get_nrows() call psb_bcast(ictxt,m_problem) - call psb_mat_renum(psb_mat_renum_identity_,aux_a,info,perm) ! At this point aux_b may still be unallocated if (size(aux_b,dim=1) == m_problem) then @@ -180,7 +181,9 @@ program psb_sf_sample write(psb_out_unit,'("Partition type: graph vector")') write(psb_out_unit,'(" ")') ! write(psb_err_unit,'("Build type: graph")') - call build_mtpart(aux_a,np) + call aux_a%cscnv(info,type='csr') + lnp = np + call build_mtpart(aux_a,lnp) endif call psb_barrier(ictxt) diff --git a/test/fileread/psb_zf_sample.f90 b/test/fileread/psb_zf_sample.f90 index a2d54e6a..860405ba 100644 --- a/test/fileread/psb_zf_sample.f90 +++ b/test/fileread/psb_zf_sample.f90 @@ -38,10 +38,11 @@ program psb_zf_sample implicit none ! input parameters - character(len=40) :: kmethd, ptype, mtrx_file, rhs_file,renum + character(len=40) :: kmethd, ptype, mtrx_file, rhs_file ! sparse matrices - type(psb_zspmat_type) :: a, aux_a + type(psb_zspmat_type) :: a + type(psb_lzspmat_type) :: aux_a ! preconditioner data type(psb_zprec_type) :: prec @@ -56,6 +57,7 @@ program psb_zf_sample type(psb_desc_type):: desc_a integer(psb_ipk_) :: ictxt, iam, np + integer(psb_lpk_) :: lnp ! solver paramters integer(psb_ipk_) :: iter, itmax, ierr, itrace, ircode,& @@ -140,7 +142,6 @@ program psb_zf_sample m_problem = aux_a%get_nrows() call psb_bcast(ictxt,m_problem) - call psb_mat_renum(psb_mat_renum_identity_,aux_a,info,perm) ! At this point aux_b may still be unallocated if (size(aux_b,dim=1) == m_problem) then @@ -180,7 +181,9 @@ program psb_zf_sample write(psb_out_unit,'("Partition type: graph vector")') write(psb_out_unit,'(" ")') ! write(psb_err_unit,'("Build type: graph")') - call build_mtpart(aux_a,np) + call aux_a%cscnv(info,type='csr') + lnp = np + call build_mtpart(aux_a,lnp) endif call psb_barrier(ictxt) diff --git a/util/Makefile b/util/Makefile index 3f2f3553..9809a34f 100644 --- a/util/Makefile +++ b/util/Makefile @@ -38,7 +38,7 @@ $(HERE)/$(LIBNAME): $(OBJS) $(OBJS): $(MODDIR)/$(BASEMODNAME)$(.mod) psb_util_mod.o: $(BASEOBJS) -psb_metispart_mod.o: metis_int.o +psb_metispart_mod.o: psb_metis_int.o psb_mat_dist_mod.o: psb_s_mat_dist_mod.o psb_d_mat_dist_mod.o psb_c_mat_dist_mod.o psb_z_mat_dist_mod.o $(IMPLOBJS): $(BASEOBJS) diff --git a/util/psb_metis_int.c b/util/psb_metis_int.c index ad3abec9..0b76c2a6 100644 --- a/util/psb_metis_int.c +++ b/util/psb_metis_int.c @@ -1,31 +1,10 @@ #include #if defined(HAVE_METIS_) -#include "metis.h" +#include "psb_metis_int.h" -typedef int32_t psb_m_t; - -#if defined(IPK4) && defined(LPK4) -typedef int32_t psb_i_t; -typedef int32_t psb_l_t; -#elif defined(IPK4) && defined(LPK8) -typedef int32_t psb_i_t; -typedef int64_t psb_l_t; -#elif defined(IPK8) && defined(LPK8) -typedef int64_t psb_i_t; -typedef int64_t psb_l_t; -#else -#endif -typedef int64_t psb_e_t; - -typedef float psb_s_t; -typedef double psb_d_t; -typedef float complex psb_c_t; -typedef double complex psb_z_t; - - -int metis_PartGraphKway_C(int *n, int *ixadj, int *iadj, int *ivwg, - int *iajw, int *nparts, float *weights, - int *graphpart) +int metis_PartGraphKway_C(idx_t *n, idx_t *ixadj, idx_t *iadj, idx_t *ivwg, + idx_t *iajw, idx_t *nparts, float *weights, + idx_t *graphpart) { int res = -1; idx_t objval = 0; @@ -58,9 +37,9 @@ int metis_PartGraphKway_C(int *n, int *ixadj, int *iadj, int *ivwg, #else -int metis_PartGraphKway_C(int *n, int *ixadj, int *iadj, int *ivwg, - int *iajw, int *nparts, float *weights, - int *graphpart) +int metis_PartGraphKway_C(idx_t *n, idx_t *ixadj, idx_t *iadj, idx_t *ivwg, + idx_t *iajw, idx_t *nparts, float *weights, + idx_t *graphpart) { return(-1); } diff --git a/util/psb_metispart_mod.F90 b/util/psb_metispart_mod.F90 index 425d8106..fa6581e9 100644 --- a/util/psb_metispart_mod.F90 +++ b/util/psb_metispart_mod.F90 @@ -54,31 +54,32 @@ ! uses information prepared by the previous two subroutines. ! module psb_metispart_mod - use psb_base_mod, only : psb_sspmat_type, psb_cspmat_type,& - & psb_dspmat_type, psb_zspmat_type, psb_err_unit, & - & psb_ipk_, psb_lpk_, psb_mpk_, psb_epk_, psb_spk_,& - & psb_s_csr_sparse_mat, psb_d_csr_sparse_mat, & - & psb_c_csr_sparse_mat, psb_z_csr_sparse_mat + use psb_base_mod, only : psb_ipk_, psb_lpk_, psb_mpk_, psb_epk_, & + & psb_err_unit, psb_spk_,& + & psb_lsspmat_type, psb_lcspmat_type,& + & psb_ldspmat_type, psb_lzspmat_type, & + & psb_ls_csr_sparse_mat, psb_ld_csr_sparse_mat, & + & psb_lc_csr_sparse_mat, psb_lz_csr_sparse_mat public part_graph, build_mtpart, distr_mtpart,& & getv_mtpart, free_part private - integer(psb_ipk_), allocatable, save :: graph_vect(:) + integer(psb_lpk_), allocatable, save :: graph_vect(:) interface build_mtpart - module procedure d_mat_build_mtpart, s_mat_build_mtpart,& - & z_mat_build_mtpart, c_mat_build_mtpart + module procedure ld_mat_build_mtpart, ls_mat_build_mtpart,& + & lz_mat_build_mtpart, lc_mat_build_mtpart end interface - interface - subroutine psi_build_mtpart(n,ja,irp,nparts,vect, weights) - import :: psb_ipk_, psb_spk_ + interface psi_build_mtpart + subroutine psi_l_build_mtpart(n,ja,irp,nparts,vect, weights) + import :: psb_lpk_, psb_spk_ implicit none - integer(psb_ipk_), intent(in) :: n, nparts - integer(psb_ipk_), intent(in) :: ja(:), irp(:) - integer(psb_ipk_), allocatable, intent(inout) :: vect(:) + integer(psb_lpk_), intent(in) :: n, nparts + integer(psb_lpk_), intent(in) :: ja(:), irp(:) + integer(psb_lpk_), allocatable, intent(inout) :: vect(:) real(psb_spk_),optional, intent(in) :: weights(:) - end subroutine psi_build_mtpart + end subroutine psi_l_build_mtpart end interface contains @@ -155,29 +156,30 @@ contains ivg(:) = graph_vect(:) end if end subroutine getv_mtpart - - subroutine d_mat_build_mtpart(a,nparts,weights) + + + subroutine ld_mat_build_mtpart(a,nparts,weights) use psb_base_mod implicit none - type(psb_dspmat_type), intent(in) :: a - integer(psb_ipk_) :: nparts + type(psb_ldspmat_type), intent(in) :: a + integer(psb_lpk_) :: nparts real(psb_dpk_), optional :: weights(:) select type (aa=>a%a) - type is (psb_d_csr_sparse_mat) - call d_csr_build_mtpart(aa,nparts,weights) + type is (psb_ld_csr_sparse_mat) + call ld_csr_build_mtpart(aa,nparts,weights) class default write(psb_err_unit,*) 'Sorry, right now we only take CSR input!' end select - end subroutine d_mat_build_mtpart + end subroutine ld_mat_build_mtpart - subroutine d_csr_build_mtpart(a,nparts,weights) + subroutine ld_csr_build_mtpart(a,nparts,weights) use psb_base_mod implicit none - type(psb_d_csr_sparse_mat), intent(in) :: a - integer(psb_ipk_) :: nparts + type(psb_ld_csr_sparse_mat), intent(in) :: a + integer(psb_lpk_) :: nparts real(psb_dpk_), optional :: weights(:) real(psb_spk_), allocatable :: wgh_(:) @@ -193,30 +195,30 @@ contains call psi_build_mtpart(a%get_nrows(),a%ja,a%irp,nparts,graph_vect) end if - end subroutine d_csr_build_mtpart + end subroutine ld_csr_build_mtpart - subroutine z_mat_build_mtpart(a,nparts,weights) + subroutine lz_mat_build_mtpart(a,nparts,weights) use psb_base_mod implicit none - type(psb_zspmat_type), intent(in) :: a - integer(psb_ipk_) :: nparts + type(psb_lzspmat_type), intent(in) :: a + integer(psb_lpk_) :: nparts real(psb_dpk_), optional :: weights(:) select type (aa=>a%a) - type is (psb_z_csr_sparse_mat) - call z_csr_build_mtpart(aa,nparts,weights) + type is (psb_lz_csr_sparse_mat) + call lz_csr_build_mtpart(aa,nparts,weights) class default write(psb_err_unit,*) 'Sorry, right now we only take CSR input!' end select - end subroutine z_mat_build_mtpart + end subroutine lz_mat_build_mtpart - subroutine z_csr_build_mtpart(a,nparts,weights) + subroutine lz_csr_build_mtpart(a,nparts,weights) use psb_base_mod implicit none - type(psb_z_csr_sparse_mat), intent(in) :: a - integer(psb_ipk_) :: nparts + type(psb_lz_csr_sparse_mat), intent(in) :: a + integer(psb_lpk_) :: nparts real(psb_dpk_), optional :: weights(:) real(psb_spk_), allocatable :: wgh_(:) @@ -232,66 +234,66 @@ contains call psi_build_mtpart(a%get_nrows(),a%ja,a%irp,nparts,graph_vect) end if - end subroutine z_csr_build_mtpart + end subroutine lz_csr_build_mtpart - subroutine s_mat_build_mtpart(a,nparts,weights) + subroutine ls_mat_build_mtpart(a,nparts,weights) use psb_base_mod implicit none - type(psb_sspmat_type), intent(in) :: a - integer(psb_ipk_) :: nparts + type(psb_lsspmat_type), intent(in) :: a + integer(psb_lpk_) :: nparts real(psb_spk_), optional :: weights(:) select type (aa=>a%a) - type is (psb_s_csr_sparse_mat) - call s_csr_build_mtpart(aa,nparts,weights) + type is (psb_ls_csr_sparse_mat) + call ls_csr_build_mtpart(aa,nparts,weights) class default write(psb_err_unit,*) 'Sorry, right now we only take CSR input!' end select - end subroutine s_mat_build_mtpart + end subroutine ls_mat_build_mtpart - subroutine c_mat_build_mtpart(a,nparts,weights) + subroutine lc_mat_build_mtpart(a,nparts,weights) use psb_base_mod implicit none - type(psb_cspmat_type), intent(in) :: a - integer(psb_ipk_) :: nparts + type(psb_lcspmat_type), intent(in) :: a + integer(psb_lpk_) :: nparts real(psb_spk_), optional :: weights(:) select type (aa=>a%a) - type is (psb_c_csr_sparse_mat) - call c_csr_build_mtpart(aa,nparts,weights) + type is (psb_lc_csr_sparse_mat) + call lc_csr_build_mtpart(aa,nparts,weights) class default write(psb_err_unit,*) 'Sorry, right now we only take CSR input!' end select - end subroutine c_mat_build_mtpart + end subroutine lc_mat_build_mtpart - subroutine c_csr_build_mtpart(a,nparts,weights) + subroutine lc_csr_build_mtpart(a,nparts,weights) use psb_base_mod implicit none - type(psb_c_csr_sparse_mat), intent(in) :: a - integer(psb_ipk_) :: nparts + type(psb_lc_csr_sparse_mat), intent(in) :: a + integer(psb_lpk_) :: nparts real(psb_spk_), optional :: weights(:) call psi_build_mtpart(a%get_nrows(),a%ja,a%irp,nparts,graph_vect,weights) - end subroutine c_csr_build_mtpart + end subroutine lc_csr_build_mtpart - subroutine s_csr_build_mtpart(a,nparts,weights) + subroutine ls_csr_build_mtpart(a,nparts,weights) use psb_base_mod implicit none - type(psb_s_csr_sparse_mat), intent(in) :: a - integer(psb_ipk_) :: nparts + type(psb_ls_csr_sparse_mat), intent(in) :: a + integer(psb_lpk_) :: nparts real(psb_spk_), optional :: weights(:) - + call psi_build_mtpart(a%get_nrows(),a%ja,a%irp,nparts,graph_vect,weights) - end subroutine s_csr_build_mtpart - + end subroutine ls_csr_build_mtpart + ! ! WARNING: called IRET otherwise Intel compiler complains, ! methinks it's a compiler bug, will need to report. diff --git a/util/psi_build_mtpart.F90 b/util/psi_build_mtpart.F90 index b8974185..d01c3d85 100644 --- a/util/psi_build_mtpart.F90 +++ b/util/psi_build_mtpart.F90 @@ -1,31 +1,21 @@ - -subroutine psi_build_mtpart(n,ja,irp,nparts,graph_vect,weights) +subroutine psi_l_build_mtpart(n,ja,irp,nparts,graph_vect,weights) use psb_base_mod use iso_c_binding implicit none - integer(psb_ipk_), intent(in) :: n, nparts - integer(psb_ipk_), intent(in) :: ja(:), irp(:) - integer(psb_ipk_), allocatable, intent(inout) :: graph_vect(:) + integer(psb_lpk_), intent(in) :: n, nparts + integer(psb_lpk_), intent(in) :: ja(:), irp(:) + integer(psb_lpk_), allocatable, intent(inout) :: graph_vect(:) real(psb_spk_),optional, intent(in) :: weights(:) ! local variables - integer(psb_ipk_) :: i,numflag, nedc,wgflag - integer(psb_ipk_) :: iopt(10),idummy(2),jdummy(2), info - integer(psb_ipk_) :: nl,nptl - integer(psb_ipk_), allocatable :: irpl(:),jal(:),gvl(:) + integer(psb_lpk_) :: i,numflag, nedc,wgflag + integer(psb_lpk_) :: iopt(10),idummy(2),jdummy(2) + integer(psb_ipk_) :: info + integer(psb_lpk_) :: nl,nptl + integer(psb_lpk_), allocatable :: irpl(:),jal(:),gvl(:) real(psb_spk_),allocatable :: wgh_(:) -#if defined(HAVE_METIS) && defined(IPK4) +#if defined(HAVE_METIS) && defined(LPK4) && defined(METIS_32) interface - ! subroutine METIS_PartGraphKway(n,ixadj,iadj,ivwg,iajw,& - ! & wgflag,numflag,nparts,weights,iopt,nedc,part) bind(c) - ! use iso_c_binding - ! integer(c_int) :: n,wgflag,numflag,nparts,nedc - ! integer(c_int) :: ixadj(*),iadj(*),ivwg(*),iajw(*),iopt(*),part(*) - ! real(c_float) :: weights(*) - ! !integer(psb_ipk_) :: n,wgflag,numflag,nparts,nedc - ! !integer(psb_ipk_) :: ixadj(*),iadj(*),ivwg(*),iajw(*),iopt(*),part(*) - ! end subroutine METIS_PartGraphKway - function METIS_PartGraphKway(n,ixadj,iadj,ivwg,iajw,& & nparts,weights,part) bind(c,name="metis_PartGraphKway_C") result(res) use iso_c_binding @@ -86,10 +76,76 @@ subroutine psi_build_mtpart(n,ja,irp,nparts,graph_vect,weights) graph_vect(i) = 0 enddo endif + +#elif defined(HAVE_METIS) && defined(LPK8) && defined(METIS_64) + + interface + function METIS_PartGraphKway(n,ixadj,iadj,ivwg,iajw,& + & nparts,weights,part) bind(c,name="metis_PartGraphKway_C") result(res) + use iso_c_binding + integer(c_long_long) :: res + integer(c_long_long) :: n,nparts + integer(c_long_long) :: ixadj(*),iadj(*),ivwg(*),iajw(*),part(*) + real(c_float) :: weights(*) + !integer(psb_ipk_) :: n,wgflag,numflag,nparts,nedc + !integer(psb_ipk_) :: ixadj(*),iadj(*),ivwg(*),iajw(*),iopt(*),part(*) + end function METIS_PartGraphKway + end interface + + call psb_realloc(n,graph_vect,info) + if (info == psb_success_) allocate(gvl(n),wgh_(nparts),stat=info) + + if (info /= psb_success_) then + write(psb_err_unit,*) 'Fatal error in BUILD_MTPART: memory allocation ',& + & ' failure.' + return + endif + if (nparts > 1) then + iopt(1) = 0 + numflag = 1 + wgflag = 0 + +!!$ write(*,*) 'Before allocation',nparts + + irpl=irp + jal = ja + nl = n + nptl = nparts + wgh_ = -1.0 + if(present(weights)) then + if (size(weights) == nptl) then +!!$ write(*,*) 'weights present',weights + ! call METIS_PartGraphKway(n,irp,ja,idummy,jdummy,& + ! & wgflag,numflag,nparts,weights,iopt,nedc,graph_vect) + info = METIS_PartGraphKway(nl,irpl,jal,idummy,jdummy,& + & nptl,weights,gvl) + + else +!!$ write(*,*) 'weights absent',wgh_ + info = METIS_PartGraphKway(nl,irpl,jal,idummy,jdummy,& + & nptl,wgh_,gvl) + end if + else +!!$ write(*,*) 'weights absent',wgh_ + info = METIS_PartGraphKway(nl,irpl,jal,idummy,jdummy,& + & nptl,wgh_,gvl) + endif +!!$ write(*,*) 'after allocation',info + + do i=1, n + graph_vect(i) = gvl(i) - 1 + enddo + else + do i=1, n + graph_vect(i) = 0 + enddo + endif + #else - write(psb_err_unit,*) 'Warning: METIS was not configured at PSBLAS compile time !' + + write(psb_err_unit,*) 'Warning: no suitable METIS interface for LPK indices' #endif return -end subroutine psi_build_mtpart +end subroutine psi_l_build_mtpart From 7c2b613ea51fe7dc7865e387b08368d3f4dd62ce Mon Sep 17 00:00:00 2001 From: Salvatore Filippone Date: Thu, 23 Jul 2020 12:01:23 +0200 Subject: [PATCH 6/7] Fixed new handling of METIS 32/64 bits. Make some Fortran features mandatory --- config/pac.m4 | 2 +- configure | 154 +++++++++++++++++++++++++++----------------------- configure.ac | 35 +++++++----- 3 files changed, 104 insertions(+), 87 deletions(-) diff --git a/config/pac.m4 b/config/pac.m4 index 0fd295f2..c9f55d94 100644 --- a/config/pac.m4 +++ b/config/pac.m4 @@ -1852,8 +1852,8 @@ if test "x$pac_metis_header_ok" == "xyes" ; then AC_LANG_PUSH([C]) AC_MSG_CHECKING([for METIS idx size]) AC_LINK_IFELSE([AC_LANG_SOURCE( - #include <$psblas_cv_metisincfile> #include + #include "$psblas_cv_metisincfile" void main(){ printf("%d\n",IDXTYPEWIDTH); } diff --git a/configure b/configure index cfba49ad..ccefc2c0 100755 --- a/configure +++ b/configure @@ -1,6 +1,6 @@ #! /bin/sh # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.69 for PSBLAS 3.7. +# Generated by GNU Autoconf 2.69 for PSBLAS 3.7.0. # # Report bugs to . # @@ -580,8 +580,8 @@ MAKEFLAGS= # Identity of this package. PACKAGE_NAME='PSBLAS' PACKAGE_TARNAME='psblas' -PACKAGE_VERSION='3.7' -PACKAGE_STRING='PSBLAS 3.7' +PACKAGE_VERSION='3.7.0' +PACKAGE_STRING='PSBLAS 3.7.0' PACKAGE_BUGREPORT='https://github.com/sfilippone/psblas3/issues' PACKAGE_URL='' @@ -626,6 +626,7 @@ ac_subst_vars='am__EXEEXT_FALSE am__EXEEXT_TRUE LTLIBOBJS LIBOBJS +METISINCFILE UTILLIBNAME METHDLIBNAME PRECLIBNAME @@ -1337,7 +1338,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures PSBLAS 3.7 to adapt to many kinds of systems. +\`configure' configures PSBLAS 3.7.0 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1403,7 +1404,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of PSBLAS 3.7:";; + short | recursive ) echo "Configuration of PSBLAS 3.7.0:";; esac cat <<\_ACEOF @@ -1546,7 +1547,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -PSBLAS configure 3.7 +PSBLAS configure 3.7.0 generated by GNU Autoconf 2.69 Copyright (C) 2012 Free Software Foundation, Inc. @@ -2182,7 +2183,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by PSBLAS $as_me 3.7, which was +It was created by PSBLAS $as_me 3.7.0, which was generated by GNU Autoconf 2.69. Invocation command line was $ $0 $@ @@ -2533,7 +2534,7 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu # VERSION is the file containing the PSBLAS version code # FIXME -psblas_cv_version="3.7" +psblas_cv_version="3.7.0" # A sample source file @@ -5459,7 +5460,7 @@ fi # Define the identity of the package. PACKAGE='psblas' - VERSION='3.7' + VERSION='3.7.0' cat >>confdefs.h <<_ACEOF @@ -7363,10 +7364,6 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu -# -# Optional features -# - { $as_echo "$as_me:${as_lineno-$LINENO}: checking support for Fortran VOLATILE" >&5 $as_echo_n "checking support for Fortran VOLATILE... " >&6; } ac_ext=${ac_fc_srcext-f} @@ -7386,12 +7383,13 @@ _ACEOF if ac_fn_fc_try_compile "$LINENO"; then : { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 $as_echo "yes" >&6; } - FDEFINES="$psblas_cv_define_prepend-DHAVE_VOLATILE $FDEFINES" + : else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } echo "configure: failed program was:" >&5 cat conftest.$ac_ext >&5 + as_fn_error $? "Sorry, cannot build PSBLAS without support for VOLATILE" "$LINENO" 5 fi rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext @@ -7403,31 +7401,21 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu -{ $as_echo "$as_me:${as_lineno-$LINENO}: checking test GENERIC interfaces" >&5 -$as_echo_n "checking test GENERIC interfaces... " >&6; } -ac_ext=${ac_fc_srcext-f} +{ $as_echo "$as_me:${as_lineno-$LINENO}: checking support for ISO_FORTRAN_ENV" >&5 +$as_echo_n "checking support for ISO_FORTRAN_ENV... " >&6; } + ac_ext=${ac_fc_srcext-f} ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_fc_compiler_gnu ac_exeext='' - ac_ext='F90' + ac_ext='f90' ac_fc=${MPIFC-$FC}; cat > conftest.$ac_ext <<_ACEOF -module conftest - - interface foo - subroutine i_sub_foo(v) - integer, intent(inout) :: v(:) - end subroutine i_sub_foo - end interface foo - - interface bar - procedure i_sub_foo - end interface bar - -end module conftest + program test + use iso_fortran_env + end program test _ACEOF if ac_fn_fc_try_compile "$LINENO"; then : { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 @@ -7438,7 +7426,7 @@ else $as_echo "no" >&6; } echo "configure: failed program was:" >&5 cat conftest.$ac_ext >&5 - FDEFINES="$psblas_cv_define_prepend-DHAVE_BUGGY_GENERICS $FDEFINES" + as_fn_error $? "Sorry, cannot build PSBLAS without support for ISO_FORTRAN_ENV" "$LINENO" 5 fi rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext @@ -7450,8 +7438,8 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu -{ $as_echo "$as_me:${as_lineno-$LINENO}: checking support for Fortran FLUSH statement" >&5 -$as_echo_n "checking support for Fortran FLUSH statement... " >&6; } +{ $as_echo "$as_me:${as_lineno-$LINENO}: checking support for Fortran FINAL" >&5 +$as_echo_n "checking support for Fortran FINAL... " >&6; } ac_ext=${ac_fc_srcext-f} ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' @@ -7462,23 +7450,35 @@ ac_compiler_gnu=$ac_cv_fc_compiler_gnu ac_fc=${MPIFC-$FC}; cat > conftest.$ac_ext <<_ACEOF +module conftest_mod + type foo + integer :: i + contains + final :: destroy_foo + end type foo + + private destroy_foo +contains + subroutine destroy_foo(a) + type(foo) :: a + ! Just a test + end subroutine destroy_foo +end module conftest_mod program conftest - integer :: iunit=10 - open(10) - write(10,*) 'Test ' - flush(10) - close(10) + use conftest_mod + type(foo) :: foovar end program conftest _ACEOF if ac_fn_fc_try_compile "$LINENO"; then : { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 $as_echo "yes" >&6; } - FDEFINES="$psblas_cv_define_prepend-DHAVE_FLUSH_STMT $FDEFINES" + : else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } echo "configure: failed program was:" >&5 cat conftest.$ac_ext >&5 + as_fn_error $? "Sorry, cannot build PSBLAS without support for FINAL" "$LINENO" 5 fi rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext @@ -7490,31 +7490,48 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu -{ $as_echo "$as_me:${as_lineno-$LINENO}: checking support for ISO_FORTRAN_ENV" >&5 -$as_echo_n "checking support for ISO_FORTRAN_ENV... " >&6; } - ac_ext=${ac_fc_srcext-f} + +# +# Optional features +# + + +{ $as_echo "$as_me:${as_lineno-$LINENO}: checking test GENERIC interfaces" >&5 +$as_echo_n "checking test GENERIC interfaces... " >&6; } +ac_ext=${ac_fc_srcext-f} ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_fc_compiler_gnu ac_exeext='' - ac_ext='f90' + ac_ext='F90' ac_fc=${MPIFC-$FC}; cat > conftest.$ac_ext <<_ACEOF - program test - use iso_fortran_env - end program test +module conftest + + interface foo + subroutine i_sub_foo(v) + integer, intent(inout) :: v(:) + end subroutine i_sub_foo + end interface foo + + interface bar + procedure i_sub_foo + end interface bar + +end module conftest _ACEOF if ac_fn_fc_try_compile "$LINENO"; then : { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 $as_echo "yes" >&6; } - FDEFINES="$psblas_cv_define_prepend-DHAVE_ISO_FORTRAN_ENV $FDEFINES" + : else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } echo "configure: failed program was:" >&5 cat conftest.$ac_ext >&5 + FDEFINES="$psblas_cv_define_prepend-DHAVE_BUGGY_GENERICS $FDEFINES" fi rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext @@ -7526,8 +7543,8 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu -{ $as_echo "$as_me:${as_lineno-$LINENO}: checking support for Fortran FINAL" >&5 -$as_echo_n "checking support for Fortran FINAL... " >&6; } +{ $as_echo "$as_me:${as_lineno-$LINENO}: checking support for Fortran FLUSH statement" >&5 +$as_echo_n "checking support for Fortran FLUSH statement... " >&6; } ac_ext=${ac_fc_srcext-f} ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' @@ -7538,29 +7555,18 @@ ac_compiler_gnu=$ac_cv_fc_compiler_gnu ac_fc=${MPIFC-$FC}; cat > conftest.$ac_ext <<_ACEOF -module conftest_mod - type foo - integer :: i - contains - final :: destroy_foo - end type foo - - private destroy_foo -contains - subroutine destroy_foo(a) - type(foo) :: a - ! Just a test - end subroutine destroy_foo -end module conftest_mod program conftest - use conftest_mod - type(foo) :: foovar + integer :: iunit=10 + open(10) + write(10,*) 'Test ' + flush(10) + close(10) end program conftest _ACEOF if ac_fn_fc_try_compile "$LINENO"; then : { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 $as_echo "yes" >&6; } - FDEFINES="$psblas_cv_define_prepend-DHAVE_FINAL $FDEFINES" + FDEFINES="$psblas_cv_define_prepend-DHAVE_FLUSH_STMT $FDEFINES" else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } @@ -8986,8 +8992,8 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu $as_echo_n "checking for METIS idx size... " >&6; } cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ -#include <$psblas_cv_metisincfile> - #include +#include + #include "$psblas_cv_metisincfile" void main(){ printf("%d\n",IDXTYPEWIDTH); } @@ -9154,6 +9160,7 @@ if test "x$pac_cv_metis_idx" == "xunknown" ; then elif test "x$psblas_cv_have_metis" == "xyes" ; then FDEFINES="$psblas_cv_define_prepend-DHAVE_METIS $psblas_cv_define_prepend-DMETIS_$pac_cv_metis_idx $FDEFINES" CDEFINES="-DHAVE_METIS_ $psblas_cv_metis_includes $CDEFINES -DMETIS_$pac_cv_metis_idx" + METISINCFILE=$psblas_cv_metisincfile fi @@ -9418,7 +9425,6 @@ UTILLIBNAME=libpsb_util.a - PSBLASRULES=' @@ -9444,11 +9450,14 @@ FDEFINES=$(PSBFDEFINES) + ############################################################################### # the following files will be created by Automake ac_config_files="$ac_config_files Make.inc" +ac_config_files="$ac_config_files util/psb_metis_int.h" + cat >confcache <<\_ACEOF # This file is a shell script that caches the results of configure # tests run on this system so they can be shared between configure @@ -10015,7 +10024,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by PSBLAS $as_me 3.7, which was +This file was extended by PSBLAS $as_me 3.7.0, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -10072,7 +10081,7 @@ _ACEOF cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ac_cs_version="\\ -PSBLAS config.status 3.7 +PSBLAS config.status 3.7.0 configured by $0, generated by GNU Autoconf 2.69, with options \\"\$ac_cs_config\\" @@ -10192,6 +10201,7 @@ do case $ac_config_target in "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;; "Make.inc") CONFIG_FILES="$CONFIG_FILES Make.inc" ;; + "util/psb_metis_int.h") CONFIG_FILES="$CONFIG_FILES util/psb_metis_int.h" ;; *) as_fn_error $? "invalid argument: \`$ac_config_target'" "$LINENO" 5;; esac diff --git a/configure.ac b/configure.ac index 64fbe596..9edcb290 100755 --- a/configure.ac +++ b/configure.ac @@ -36,11 +36,11 @@ dnl NOTE : There is no cross compilation support. ############################################################################### # NOTE: the literal for version (the second argument to AC_INIT should be a literal!) -AC_INIT([PSBLAS],3.7, [https://github.com/sfilippone/psblas3/issues]) +AC_INIT([PSBLAS],3.7.0, [https://github.com/sfilippone/psblas3/issues]) # VERSION is the file containing the PSBLAS version code # FIXME -psblas_cv_version="3.7" +psblas_cv_version="3.7.0" # A sample source file AC_CONFIG_SRCDIR([base/modules/psb_base_mod.f90]) @@ -561,13 +561,26 @@ PAC_FORTRAN_TEST_MOLD( Please get a Fortran compiler that supports it, e.g. GNU Fortran 4.8.])] ) +PAC_FORTRAN_TEST_VOLATILE( + [], + [AC_MSG_ERROR([Sorry, cannot build PSBLAS without support for VOLATILE])] +) + +PAC_FORTRAN_TEST_ISO_FORTRAN_ENV( + [], + [AC_MSG_ERROR([Sorry, cannot build PSBLAS without support for ISO_FORTRAN_ENV])] +) + +PAC_FORTRAN_TEST_FINAL( + [], + [AC_MSG_ERROR([Sorry, cannot build PSBLAS without support for FINAL])] +) + + # # Optional features # -PAC_FORTRAN_TEST_VOLATILE( - [FDEFINES="$psblas_cv_define_prepend-DHAVE_VOLATILE $FDEFINES"], -) PAC_FORTRAN_TEST_GENERICS( [], @@ -578,14 +591,6 @@ PAC_FORTRAN_TEST_FLUSH( [FDEFINES="$psblas_cv_define_prepend-DHAVE_FLUSH_STMT $FDEFINES"], ) -PAC_FORTRAN_TEST_ISO_FORTRAN_ENV( - [FDEFINES="$psblas_cv_define_prepend-DHAVE_ISO_FORTRAN_ENV $FDEFINES"], -) - -PAC_FORTRAN_TEST_FINAL( - [FDEFINES="$psblas_cv_define_prepend-DHAVE_FINAL $FDEFINES"], -) - ############################################################################### # Additional pathname stuff (yes, it is redundant and confusing...) @@ -694,6 +699,7 @@ if test "x$pac_cv_metis_idx" == "xunknown" ; then elif test "x$psblas_cv_have_metis" == "xyes" ; then FDEFINES="$psblas_cv_define_prepend-DHAVE_METIS $psblas_cv_define_prepend-DMETIS_$pac_cv_metis_idx $FDEFINES" CDEFINES="-DHAVE_METIS_ $psblas_cv_metis_includes $CDEFINES -DMETIS_$pac_cv_metis_idx" + METISINCFILE=$psblas_cv_metisincfile fi PAC_CHECK_AMD @@ -758,7 +764,6 @@ AC_SUBST(LAPACK_LIBS) AC_SUBST(CINCLUDES) AC_SUBST(FINCLUDES) - PSBLASRULES=' PSBLDLIBS=$(LAPACK) $(BLAS) $(METIS_LIB) $(AMD_LIB) $(LIBS) CDEFINES=$(PSBCDEFINES) @@ -781,11 +786,13 @@ AC_SUBST(BASELIBNAME) AC_SUBST(PRECLIBNAME) AC_SUBST(METHDLIBNAME) AC_SUBST(UTILLIBNAME) +AC_SUBST(METISINCFILE) ############################################################################### # the following files will be created by Automake AC_CONFIG_FILES([Make.inc]) +AC_CONFIG_FILES([util/psb_metis_int.h]) AC_OUTPUT() #AC_OUTPUT(Make.inc Makefile) ############################################################################### From c9e2d3ed448a2d56a816b0476385652677bd3be5 Mon Sep 17 00:00:00 2001 From: Salvatore Filippone Date: Thu, 23 Jul 2020 12:01:55 +0200 Subject: [PATCH 7/7] Modified docs to included LXspmat & friends. --- docs/html/cmsy10-42.png | Bin 331 -> 334 bytes docs/html/cmsy10-48.png | Bin 373 -> 382 bytes docs/html/cmsy10-49.png | Bin 292 -> 296 bytes docs/html/userhtml.css | 13 +- docs/html/userhtml0x.png | Bin 1674 -> 1688 bytes docs/html/userhtml10x.png | Bin 2147 -> 2141 bytes docs/html/userhtml11x.png | Bin 1295 -> 1331 bytes docs/html/userhtml12x.png | Bin 2015 -> 2039 bytes docs/html/userhtml13x.png | Bin 1306 -> 1289 bytes docs/html/userhtml14x.png | Bin 1325 -> 1317 bytes docs/html/userhtml15x.png | Bin 1572 -> 1599 bytes docs/html/userhtml16x.png | Bin 1078 -> 1105 bytes docs/html/userhtml17x.png | Bin 1236 -> 1244 bytes docs/html/userhtml18x.png | Bin 1299 -> 1304 bytes docs/html/userhtml19x.png | Bin 1474 -> 1475 bytes docs/html/userhtml1x.png | Bin 1122 -> 1124 bytes docs/html/userhtml20x.png | Bin 1476 -> 1465 bytes docs/html/userhtml21x.png | Bin 11173 -> 10552 bytes 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+++++++++++++++--------------- docs/html/userhtmlsu11.html | 92 +++++- docs/html/userhtmlsu13.html | 86 +++++- docs/html/userhtmlsu15.html | 86 +++++- docs/html/userhtmlsu17.html | 86 +++++- docs/html/userhtmlsu26.html | 34 ++- docs/html/userhtmlsu27.html | 37 ++- docs/html/userhtmlsu28.html | 39 ++- docs/html/userhtmlsu29.html | 22 +- docs/html/userhtmlsu6.html | 178 ++++++------ docs/html/userhtmlsu7.html | 62 ++--- docs/html/userhtmlsu74.html | 16 +- docs/html/userhtmlsu75.html | 7 +- docs/html/userhtmlsu76.html | 7 +- docs/html/userhtmlsu77.html | 7 +- docs/html/userhtmlsu78.html | 22 +- docs/html/userhtmlsu79.html | 25 +- docs/html/userhtmlsu8.html | 16 +- docs/html/userhtmlsu80.html | 16 +- docs/html/userhtmlsu81.html | 16 +- docs/html/userhtmlsu82.html | 19 +- docs/html/userhtmlsu83.html | 19 +- docs/html/userhtmlsu9.html | 8 +- docs/html/userhtmlsu90.html | 45 ++- docs/psblas-3.7.pdf | 542 ++++++++++++++++++------------------ docs/src/datastruct.tex | 4 +- 63 files changed, 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font-style: italic;} .cmti-12{font-size:120%; font-style: italic;} .cmbx-10{ font-weight: bold;} .cmbx-10{ font-weight: bold;} .cmbx-10{ font-weight: bold;} -.cmbx-10{ font-weight: bold;} .cmtt-10{font-family: monospace;} .cmtt-10{font-family: monospace;} .cmtt-10{font-family: monospace;} @@ -23,7 +21,6 @@ .cmbx-12{font-size:120%; font-weight: bold;} .cmbx-12{ font-weight: bold;} .cmbx-12{ font-weight: bold;} -.cmbx-12{ font-weight: bold;} .cmtt-8{font-size:80%;font-family: monospace;} .cmtt-8{font-family: monospace;} .cmtt-8{font-family: monospace;} @@ -31,10 +28,6 @@ .cmtt-9{font-family: monospace;} .cmtt-9{font-family: monospace;} .cmmi-8{font-size:80%;font-style: italic;} -.cmbx-9{font-size:90%; font-weight: bold;} -.cmbx-9{ font-weight: bold;} -.cmbx-9{ font-weight: bold;} -.cmbx-9{ font-weight: bold;} p.noindent { text-indent: 0em } td p.noindent { text-indent: 0em; margin-top:0em; } p.nopar { text-indent: 0em; } @@ -104,8 +97,9 @@ span.LATEX span.TEX{ position:relative; left: 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subroutine psb_foo(some args, info) 
subroutine psb_foo(some args, info) 
   ... 
   ... 
   if(error detected) then 
   if(error detected) then 
      info=errcode1 
      info=errcode1 
      call psb_errpush(’psb_foo’, errcode1) 
      call psb_errpush(’psb_foo’, errcode1) 
      goto 9999 
      goto 9999 
   end if 
   end if 
   ... 
   ... 
   call psb_bar(some args, info) 
   call psb_bar(some args, info) 
   if(info .ne. zero) then 
   if(info .ne. zero) then 
      info=errcode2 
      info=errcode2 
      call psb_errpush(’psb_foo’, errcode2) 
      call psb_errpush(’psb_foo’, errcode2) 
      goto 9999 
      goto 9999 
   end if 
   end if 
   ... 
   ... 
9999 continue 
9999 continue 
   if (err_act .eq. act_abort) then 
   if (err_act .eq. act_abort) then 
     call psb_error(icontxt) 
     call psb_error(icontxt) 
     return 
     return 
   else 
   else 
     return 
     return 
   end if 
   end if 
 
 
end subroutine psb_foo +class="cmtt-9">end subroutine psb_foo

Notes possible to improve the runtime efficiency by using the following scheme:
    vres(1) = psb_gedot(x1,y1,desc_a,info,global=.false.) 
    vres(2) = psb_gedot(x2,y2,desc_a,info,global=.false.) 
    vres(3) = psb_gedot(x3,y3,desc_a,info,global=.false.) 
    call psb_sum(ictxt,vres(1:3)) + id="x20-57004r1">   vres(1) = psb_gedot(x1,y1,desc_a,info,global=.false.) 
   vres(2) = psb_gedot(x2,y2,desc_a,info,global=.false.) 
   vres(3) = psb_gedot(x3,y3,desc_a,info,global=.false.) 
   call psb_sum(ictxt,vres(1:3))

In this way the global communication, which for small sizes is a latency-bound diff --git a/docs/html/userhtmlsu13.html b/docs/html/userhtmlsu13.html index db09267b..0cb73107 100644 --- a/docs/html/userhtmlsu13.html +++ b/docs/html/userhtmlsu13.html @@ -194,14 +194,84 @@ class="cmbx-12">Notes multiple norms at the same time; in this case, it is possible to improve the runtime efficiency by using the following scheme:

    vres(1) = psb_geamax(x1,desc_a,info,global=.false.) 
    vres(2) = psb_geamax(x2,desc_a,info,global=.false.) 
    vres(3) = psb_geamax(x3,desc_a,info,global=.false.) 
    call psb_amx(ictxt,vres(1:3)) + id="x22-59004r1">   vres(1) = psb_geamax(x1,desc_a,info,global=.false.) 
   vres(2) = psb_geamax(x2,desc_a,info,global=.false.) 
   vres(3) = psb_geamax(x3,desc_a,info,global=.false.) 
   call psb_amx(ictxt,vres(1:3))

In this way the global communication, which for small sizes is a latency-bound diff --git a/docs/html/userhtmlsu15.html b/docs/html/userhtmlsu15.html index 61096aa2..55c54a24 100644 --- a/docs/html/userhtmlsu15.html +++ b/docs/html/userhtmlsu15.html @@ -195,14 +195,84 @@ class="cmbx-12">Notes multiple norms at the same time; in this case, it is possible to improve the runtime efficiency by using the following scheme:

    vres(1) = psb_geasum(x1,desc_a,info,global=.false.) 
    vres(2) = psb_geasum(x2,desc_a,info,global=.false.) 
    vres(3) = psb_geasum(x3,desc_a,info,global=.false.) 
    call psb_sum(ictxt,vres(1:3)) + id="x24-61004r1">   vres(1) = psb_geasum(x1,desc_a,info,global=.false.) 
   vres(2) = psb_geasum(x2,desc_a,info,global=.false.) 
   vres(3) = psb_geasum(x3,desc_a,info,global=.false.) 
   call psb_sum(ictxt,vres(1:3))

In this way the global communication, which for small sizes is a latency-bound diff --git a/docs/html/userhtmlsu17.html b/docs/html/userhtmlsu17.html index f040eafb..44716f08 100644 --- a/docs/html/userhtmlsu17.html +++ b/docs/html/userhtmlsu17.html @@ -198,14 +198,84 @@ class="cmbx-12">Notes multiple norms at the same time; in this case, it is possible to improve the runtime efficiency by using the following scheme:

    vres(1) = psb_genrm2(x1,desc_a,info,global=.false.) 
    vres(2) = psb_genrm2(x2,desc_a,info,global=.false.) 
    vres(3) = psb_genrm2(x3,desc_a,info,global=.false.) 
    call psb_nrm2(ictxt,vres(1:3)) + id="x26-63004r1">   vres(1) = psb_genrm2(x1,desc_a,info,global=.false.) 
   vres(2) = psb_genrm2(x2,desc_a,info,global=.false.) 
   vres(3) = psb_genrm2(x3,desc_a,info,global=.false.) 
   call psb_nrm2(ictxt,vres(1:3))

In this way the global communication, which for small sizes is a latency-bound diff --git a/docs/html/userhtmlsu26.html b/docs/html/userhtmlsu26.html index 2287390e..d5fe2035 100644 --- a/docs/html/userhtmlsu26.html +++ b/docs/html/userhtmlsu26.html @@ -87,10 +87,38 @@ class="content">Data types

call psb_halo(x, desc_a, info) 
call psb_halo(x, desc_a, info) 
call psb_halo(x, desc_a, info, work, data) +class="cmtt-10">call psb_halo(x, desc_a, info, work, data)
diff --git a/docs/html/userhtmlsu27.html b/docs/html/userhtmlsu27.html index 2bb4e849..f0fe399b 100644 --- a/docs/html/userhtmlsu27.html +++ b/docs/html/userhtmlsu27.html @@ -92,9 +92,42 @@ class="content">Data types
call psb_ovrl(x, desc_a, info) 
call psb_ovrl(x, desc_a, info) 
call psb_ovrl(x, desc_a, info, update=update_type, work=work) +class="cmtt-10">call psb_ovrl(x, desc_a, info, update=update_type, work=work)
diff --git a/docs/html/userhtmlsu28.html b/docs/html/userhtmlsu28.html index 45fa580e..513f7e28 100644 --- a/docs/html/userhtmlsu28.html +++ b/docs/html/userhtmlsu28.html @@ -109,9 +109,44 @@ class="content">Data types
call psb_gather(glob_x, loc_x, desc_a, info, root) 
call psb_gather(glob_x, loc_x, desc_a, info, root) 
call psb_gather(glob_x, loc_x, desc_a, info, root) +class="cmtt-10">call psb_gather(glob_x, loc_x, desc_a, info, root)
diff --git a/docs/html/userhtmlsu29.html b/docs/html/userhtmlsu29.html index 7186e307..baeee944 100644 --- a/docs/html/userhtmlsu29.html +++ b/docs/html/userhtmlsu29.html @@ -108,7 +108,27 @@ class="content">Data types
call psb_scatter(glob_x, loc_x, desc_a, info, root, mold) +class="cmtt-10">call psb_scatter(glob_x, loc_x, desc_a, info, root, mold)
diff --git a/docs/html/userhtmlsu6.html b/docs/html/userhtmlsu6.html index 18b94c13..f0ba830f 100644 --- a/docs/html/userhtmlsu6.html +++ b/docs/html/userhtmlsu6.html @@ -45,8 +45,14 @@ class="description">Single precision complex;
Z
Double precision complex.
-

The actual data is contained in the polymorphic component Double precision complex; +

+LS,LD,LC,LZ
Same numeric type as above, but with psb_lpk_ integer + indices.
+

The actual data is contained in the polymorphic component a%a of type psb_spasb routine.

-

+

  type :: psb_Tspmat_type  
    class(psb_T_base_sparse_mat), allocatable  :: a  
  end type  psb_Tspmat_type
-

+


Figure 4: The PSBLAS defined data type that contains a sparse matrix.
-

-

The following very common formats are precompiled in PSBLAS and thus are +

+

The following very common formats are precompiled in PSBLAS and thus are always available:

_coo_sparse_mat
Coordinate storage; + + +
psb_csc_sparse_mat
Compressed storage by columns;
- - - -

The inner sparse matrix has an associated state, which can take the following +

The inner sparse matrix has an associated state, which can take the following values:

State entered after a reinitalization; this is used to handl in which the same sparsity pattern is used multiple times with different coefficients. In this state it is only possible to enter coefficients for already existing nonzero entries.
-

The only storage variant supporting the build state is COO; all other variants are +

The only storage variant supporting the build state is COO; all other variants are obtained by conversion to/from it. -

+

3.2.1 Sparse Matrix Methods
-

+

3.2.2 get_nrows — Get number of rows in a sparse matrix
@@ -135,8 +141,8 @@ obtained by conversion to/from it.
nr = a%get_nrows()
-

-

+

+

Type:
the sparse matrix
Scope: local
-

+

On Return
class="cmbx-10">Function value
The number of rows of sparse matrix a.
-

+

3.2.3 get_ncols — Get number of columns in a sparse matrix
@@ -171,8 +177,8 @@ class="cmtt-10">a.
nc = a%get_ncols()
-

-

+

+

Type:
the sparse matrix
Scope: local
-

+

On Return
class="cmbx-10">Function value
The number of columns of sparse matrix a.
-

+

3.2.4 get_nnzeros — Get number of nonzero elements in a sparse matrix
@@ -207,8 +213,8 @@ class="cmtt-10">a.
nz = a%get_nnzeros()
-

-

+

+

Type:
the sparse matrix
Scope: local
-

+

On Return
class="cmbx-10">Function value
The number of nonzero elements stored in sparse matrix a.
-

Notes

  1. Notes class="cmtt-10">a; some storage formats employ padding, thus the returned value for the same matrix may be different for different storage choices.
-

+

3.2.5 get_size — Get maximum number of nonzero elements in a sparse matrix
@@ -252,8 +258,8 @@ matrix
maxnz = a%get_size()
-

-

+

+

Type:
the sparse matrix
Scope: local
-

+

On Return
Function value
The maximum number of nonzero elements that can be stored in sparse matrix a using its current memory allocation.
-

+

3.2.6 sizeof — Get memory occupation in bytes of a sparse matrix
@@ -289,8 +295,8 @@ class="cmtt-10">a using its current memory allocation.
memory_size = a%sizeof()
-

-

+

+

Type:
the sparse matrix
Scope: local
-

+

On Return
Function value
The memory occupation in bytes.
-

+

3.2.7 get_fmt — Short description of the dynamic type
@@ -324,8 +330,8 @@ class="description">The memory occupation in bytes.
write(*,*) a%get_fmt()
-

-

+

+

Type:
the sparse matrix
Scope: local
-

+

On Return
NULL, COO, CSR and CSC.
-

+

3.2.8 is_bld, is_upd, is_asb — Status check
@@ -366,8 +372,8 @@ if (a%is_bld()) then  
if (a%is_upd()) then  
if (a%is_asb()) then -

-

+

+

Type:
the sparse matrix
Scope: local
-

+

On Return
Function value
A logical value indicating whether the matrix is in the Build, Update or Assembled state, respectively.
-

+

3.2.9 is_lower, is_upper, is_triangle, is_unit — Format check
@@ -406,8 +412,8 @@ if (a%is_triangle()) then  
if (a%is_lower()) then  
if (a%is_unit()) then -

-

+

+

Type:
the sparse matrix
Scope: local
-

+

On Return
logical value indicating whether the matrix class="cmtt-10">is_triangle() returns .true. check also if it is lower, upper and with a unit (i.e. assumed) diagonal.
-

+

3.2.10 cscnv — Convert to a different storage format
@@ -447,8 +453,8 @@ class="cmtt-10">.true. check also if it is lower, upper and call  a%cscnv(b,info [, type, mold, dupl])  
call  a%cscnv(info [, type, mold, dupl]) -

-

+

+

Type:
Type: optional. class="cmbx-10">dupl
an integer value specifing how to handle duplicates (see Named Constants below)
-

+

On Return
psb_Tspmat_type. info
Return code.
-

The

The mold arguments may be employed to interface with special devices, such as GPUs and other accelerators. -

+

3.2.11 csclip — Reduce to a submatrix
@@ -511,8 +517,8 @@ and other accelerators.     call a%csclip(b,info[,&  
       & imin,imax,jmin,jmax,rscale,cscale]) -

-

Returns the submatrix

+

Returns the submatrix A(imin:imax,jmin:jmax), optionally rescaling row/col indices to the range 1:imax-imin+1,1:jmax-jmin+1. @@ -542,7 +548,7 @@ class="newline" />Type: optional. rscale,cscale

Whether to rescale row/column indices. Type: optional.
-

+

On Return
psb_Tspmat_type. info
Return code.
-

+

3.2.12 clean_zeros — Eliminate zero coefficients
@@ -567,11 +573,11 @@ class="description">Return code.
    call a%clean_zeros(info)
-

-

Eliminates zero coefficients in the input matrix. Note that depending on the +

+

Eliminates zero coefficients in the input matrix. Note that depending on the internal storage format, there may still be some amount of zero padding in the output. -

+

Type:
psb_Tspmat_type.
Scope: local.
-

+

On Return
psb_Tspmat_type. info
Return code.
-

+

3.2.13 get_diag — Get main diagonal
@@ -614,8 +620,8 @@ class="description">Return code.
    call a%get_diag(d,info)
-

-

Returns a copy of the main diagonal. +

+

Returns a copy of the main diagonal.

Type:
psb_Tspmat_type.
Scope: local.
-

+

On Return
A one-dimensional array of the appropriate type. info
Return code.
-

+

3.2.14 clip_diag — Cut out main diagonal
@@ -656,8 +662,8 @@ class="description">Return code.
    call a%clip_diag(b,info)
-

-

Returns a copy of

+

Returns a copy of a without the main diagonal.

psb_Tspmat_type.
Scope: local.
-

+

On Return
psb_Tspmat_type. info
Return code.
-

+

3.2.15 tril — Return the lower triangle
@@ -702,8 +708,8 @@ class="description">Return code.     call a%tril(l,info[,&  
       & diag,imin,imax,jmin,jmax,rscale,cscale,u]) -

-

Returns the lower triangular part of submatrix

+

Returns the lower triangular part of submatrix A(imin:imax,jmin:jmax), optionally rescaling row/col indices to the range 1:imax-imin+1,1:jmax-jmin+1 and @@ -741,7 +747,7 @@ class="newline" />Type: optional. rscale,cscale

Whether to rescale row/column indices. Type: optional.
-

+

On Return
psb_Tspmat_type. info
Return code.
-

+

3.2.16 triu — Return the upper triangle
@@ -774,8 +780,8 @@ class="description">Return code.     call a%triu(u,info[,&  
       & diag,imin,imax,jmin,jmax,rscale,cscale,l]) -

-

Returns the upper triangular part of submatrix

+

Returns the upper triangular part of submatrix A(imin:imax,jmin:jmax), optionally rescaling row/col indices to the range 1:imax-imin+1,1:jmax-jmin+1, @@ -813,7 +819,7 @@ class="newline" />Type: optional. rscale,cscale

Whether to rescale row/column indices. Type: optional.
-

+

On Return
psb_Tspmat_type. info
Return code.
-

+

3.2.17 psb_set_mat_default — Set default storage format
@@ -845,8 +851,8 @@ class="description">Return code.
call  psb_set_mat_default(a)
-

-

+

+

Type:
a variable of class(psb_T_base_sparse_mat) requesting a new default storage format.
Type: required.
-

+

3.2.18 clone — Clone current object
@@ -871,8 +877,8 @@ class="newline" />Type: required.
call  a%clone(b,info)
-

-

+

+

Type:
the sparse matrix.
Scope: local.
-

+

On Return
A copy of the input object. info
Return code.
-

+

3.2.19 Named Constants
-

+

psbUpdate strategy based on additional permutation data (see -

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-

diff --git a/docs/html/userhtmlsu7.html b/docs/html/userhtmlsu7.html index 87e649d8..439e32c9 100644 --- a/docs/html/userhtmlsu7.html +++ b/docs/html/userhtmlsu7.html @@ -10,7 +10,7 @@ -

[

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3.3 Dense Vector Data Structure

-

The

The psb_T6. Among other simple things, we define here an extraction method that can be used to get a full copy of the part of the vector stored on the local process. -

The type declaration is shown in figure 

The type declaration is shown in figure 5 where T is a placeholder for the data type and precision variants @@ -60,7 +60,7 @@ class="description">Single precision complex; Z

Double precision complex.
-

The actual data is contained in the polymorphic component

The actual data is contained in the polymorphic component v%v; the separation between the application and the actual data is essential for cases where it is necessary to link to data storage made available elsewhere outside the direct control of the @@ -70,7 +70,7 @@ compiler/application, e.g. data stored in a graphics accelerator’s private id="x15-460015">

-

+

  type psb_T_base_vect_type  
    TYPE(KIND_), allocatable :: v(:) @@ -81,18 +81,18 @@ compiler/application, e.g. data stored in a graphics accelerator’s private  
  end type  psb_T_vect_type  
-

+


Figure 5: The PSBLAS defined data type that contains a dense vector.
-

-

+

+

3.3.1 Vector Methods
-

+

3.3.2 get_nrows — Get number of rows in a dense vector
@@ -101,8 +101,8 @@ class="content"> The PSBLAS defined data type that contains a dense vector. nr = v%get_nrows() -

-

+

+

Type:
the dense vector
Scope: local
-

+

On Return
class="cmbx-10">Function value
The number of rows of dense vector v.
-

+

3.3.3 sizeof — Get memory occupation in bytes of a dense vector
@@ -137,8 +137,8 @@ class="cmtt-10">v.
memory_size = v%sizeof()
-

-

+

+

Type:
the dense vector
Scope: local
-

+

On Return
Function value
The memory occupation in bytes.
-

+

3.3.4 set — Set contents of the vector
@@ -174,8 +174,8 @@ class="description">The memory occupation in bytes.  
 call  v%set(vect[,first,last])  
 call  v%zero() -

-

+

+

Type:
Intent: in.
Specified as: a number of the data type indicated in Table 1.
-

Note that a call to

Note that a call to v%zero() is provided as a shorthand, but is equivalent to a call to v%set(zero) with the zero constant having the appropriate type and kind. -

+

On Return
-

+

3.3.5 get_vect — Get a copy of the vector contents
@@ -256,8 +256,8 @@ class="newline" />
extv = v%get_vect([n])
-

-

+

+

Type:
Type: optional; default: entire vector.
-

+

On Return
n and the internal size of the vector, or 0 if n is negative; otherwise, the size of the array is the same as the internal size of the vector.
-

+

3.3.6 clone — Clone current object
@@ -308,8 +308,8 @@ class="cmmi-10">n is negative; otherwise, the size of the array is the sa
call  x%clone(y,info)
-

-

+

+

Type:
the dense vector.
Scope: local.
-

+

On Return
Return code.
-

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-

diff --git a/docs/html/userhtmlsu74.html b/docs/html/userhtmlsu74.html index e9a4bf75..402007ce 100644 --- a/docs/html/userhtmlsu74.html +++ b/docs/html/userhtmlsu74.html @@ -19,7 +19,21 @@ href="userhtmlsu76.html#userhtmlsu77.html" >up]

call psb_errpush(err_c, r_name, i_err, a_err) +class="cmtt-10">call psb_errpush(err_c, r_name, i_err, a_err)

diff --git a/docs/html/userhtmlsu75.html b/docs/html/userhtmlsu75.html index b4726464..1b0b6bcd 100644 --- a/docs/html/userhtmlsu75.html +++ b/docs/html/userhtmlsu75.html @@ -21,7 +21,12 @@ href="userhtmlsu76.html#userhtmlse9.html" >up]

call psb_error(icontxt) +class="cmtt-10">call psb_error(icontxt)

diff --git a/docs/html/userhtmlsu76.html b/docs/html/userhtmlsu76.html index 218404fa..6ae8a04e 100644 --- a/docs/html/userhtmlsu76.html +++ b/docs/html/userhtmlsu76.html @@ -21,7 +21,12 @@ href="userhtmlsu76.html#userhtmlsu78.html" >up]

call psb_set_errverbosity(v) +class="cmtt-10">call psb_set_errverbosity(v)

diff --git a/docs/html/userhtmlsu77.html b/docs/html/userhtmlsu77.html index e1e62e1b..e3002b2c 100644 --- a/docs/html/userhtmlsu77.html +++ b/docs/html/userhtmlsu77.html @@ -21,7 +21,12 @@ condition

call psb_set_erraction(err_act) +class="cmtt-10">call psb_set_erraction(err_act)

diff --git a/docs/html/userhtmlsu78.html b/docs/html/userhtmlsu78.html index d7e6fd9f..d793b344 100644 --- a/docs/html/userhtmlsu78.html +++ b/docs/html/userhtmlsu78.html @@ -21,7 +21,27 @@ format

call hb_read(a, iret, iunit, filename, b, mtitle) +class="cmtt-10">call hb_read(a, iret, iunit, filename, b, mtitle)

diff --git a/docs/html/userhtmlsu79.html b/docs/html/userhtmlsu79.html index 47418d21..55d166d1 100644 --- a/docs/html/userhtmlsu79.html +++ b/docs/html/userhtmlsu79.html @@ -22,7 +22,30 @@ format

call hb_write(a, iret, iunit, filename, key, rhs, mtitle) +class="cmtt-10">call hb_write(a, iret, iunit, filename, key, rhs, mtitle)

diff --git a/docs/html/userhtmlsu8.html b/docs/html/userhtmlsu8.html index 5c0ff71c..5a02be22 100644 --- a/docs/html/userhtmlsu8.html +++ b/docs/html/userhtmlsu8.html @@ -10,7 +10,7 @@ -

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3.4 Preconditioner data structure

-

Our base library offers support for simple well known preconditioners like Diagonal +

Our base library offers support for simple well known preconditioners like Diagonal Scaling or Block Jacobi with incomplete factorization ILU(0). -

A preconditioner is held in the

A preconditioner is held in the psb_prec

-

+

 
  type psb_Tprec_type  
    class(psb_T_base_prec_type), allocatable :: prec  
  end type psb_Tprec_type  
-

+


Figure 6: The PSBLAS defined data type that contains a preconditioner.
-

+

-

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-

diff --git a/docs/html/userhtmlsu80.html b/docs/html/userhtmlsu80.html index ee9c2c16..547efe1d 100644 --- a/docs/html/userhtmlsu80.html +++ b/docs/html/userhtmlsu80.html @@ -23,7 +23,21 @@ format

call mm_mat_read(a, iret, iunit, filename) +class="cmtt-10">call mm_mat_read(a, iret, iunit, filename)

diff --git a/docs/html/userhtmlsu81.html b/docs/html/userhtmlsu81.html index b74cc797..38d5c58f 100644 --- a/docs/html/userhtmlsu81.html +++ b/docs/html/userhtmlsu81.html @@ -23,7 +23,21 @@ format

call mm_array_read(b, iret, iunit, filename) +class="cmtt-10">call mm_array_read(b, iret, iunit, filename)

diff --git a/docs/html/userhtmlsu82.html b/docs/html/userhtmlsu82.html index 6b3014e0..8773da4a 100644 --- a/docs/html/userhtmlsu82.html +++ b/docs/html/userhtmlsu82.html @@ -23,7 +23,24 @@ format

call mm_mat_write(a, mtitle, iret, iunit, filename) +class="cmtt-10">call mm_mat_write(a, mtitle, iret, iunit, filename)

diff --git a/docs/html/userhtmlsu83.html b/docs/html/userhtmlsu83.html index f24fcc26..a82cb59f 100644 --- a/docs/html/userhtmlsu83.html +++ b/docs/html/userhtmlsu83.html @@ -22,7 +22,24 @@ format

call mm_array_write(b, vtitle, iret, iunit, filename) +class="cmtt-10">call mm_array_write(b, vtitle, iret, iunit, filename)

diff --git a/docs/html/userhtmlsu9.html b/docs/html/userhtmlsu9.html index e78edec3..311ae768 100644 --- a/docs/html/userhtmlsu9.html +++ b/docs/html/userhtmlsu9.html @@ -10,14 +10,14 @@ -

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3.5 Heap data structure

-

Among the tools routines of sec. 

Among the tools routines of sec. 6, we have a number of sorting utilities; the heap sort is implemented in terms of heaps having the following signatures:

@@ -36,7 +36,7 @@ class="cmtt-10">_idx_heap
: a heap containing elements of type T, as above, together with an integer index.
-

Given a heap object, the following methods are defined on it: +

Given a heap object, the following methods are defined on it:

init
Print on file; free
Release memory.
-

These objects are used in MLD2P4 to implement the factorization algorithms. +

These objects are used in MLD2P4 to implement the factorization algorithms. diff --git a/docs/html/userhtmlsu90.html b/docs/html/userhtmlsu90.html index 751fcd56..b9805544 100644 --- a/docs/html/userhtmlsu90.html +++ b/docs/html/userhtmlsu90.html @@ -63,9 +63,48 @@ iteration.

call psb_krylov(method,a,prec,b,x,eps,desc_a,info,& 
     & itmax,iter,err,itrace,irst,istop,cond) +class="cmtt-10">call psb_krylov(method,a,prec,b,x,eps,desc_a,info,& 
    & itmax,iter,err,itrace,irst,istop,cond)

diff --git a/docs/psblas-3.7.pdf b/docs/psblas-3.7.pdf index 94dab2e2..0da729c5 100644 --- a/docs/psblas-3.7.pdf +++ b/docs/psblas-3.7.pdf @@ -861,7 +861,7 @@ BT 0 g 0 G [-269(.)-500(.)]TJ 0 g 0 G - [-1084(17)]TJ + [-1084(18)]TJ 0 g 0 G 0 0 1 rg 0 0 1 RG -48.751 -12.091 Td [(3.2.4)-1144(ge)-1(t)]TJ @@ -6353,7 +6353,7 @@ endstream endobj 945 0 obj << -/Length 9167 +/Length 7975 >> stream 0 g 0 G @@ -6363,221 +6363,221 @@ BT /F27 9.9626 Tf 150.705 706.129 Td [(On)-383(Return)]TJ 0 g 0 G 0 g 0 G - 0 -19.686 Td [(iprc)]TJ + 0 -21.528 Td [(iprc)]TJ 0 g 0 G -/F8 9.9626 Tf 24.339 0 Td [(the)-333(list)-334(of)-333(pro)-28(cesses)-333(o)28(w)-1(n)1(ing)-334(the)-333(indices)-333(in)]TJ/F30 9.9626 Tf 183.783 0 Td [(idx)]TJ/F8 9.9626 Tf 15.691 0 Td [(.)]TJ -198.907 -11.955 Td [(Scop)-28(e:)]TJ/F27 9.9626 Tf 32.379 0 Td [(lo)-32(cal)]TJ/F8 9.9626 Tf 23.073 0 Td [(.)]TJ -55.452 -11.955 Td [(T)28(yp)-28(e:)]TJ/F27 9.9626 Tf 29.612 0 Td [(required)]TJ/F8 9.9626 Tf 41.898 0 Td [(.)]TJ -71.51 -11.955 Td [(In)28(ten)28(t:)]TJ/F27 9.9626 Tf 33.486 0 Td [(in)]TJ/F8 9.9626 Tf 9.547 0 Td [(.)]TJ -43.033 -11.955 Td [(Sp)-28(eci\014ed)-525(as:)-828(an)-526(allo)-27(catable)-526(one-dimensional)-525(arra)28(y)-525(of)-526(in)28(tegers)-525(of)-525(kind)]TJ/F30 9.9626 Tf 0 -11.955 Td [(psb_ipk_)]TJ/F8 9.9626 Tf 41.843 0 Td [(.)]TJ -66.749 -21.318 Td [(Note:)-417(th)1(is)-278(metho)-28(d)-277(ma)28(y)-278(or)-277(ma)27(y)-277(not)-278(actual)1(ly)-278(require)-277(comm)27(unications,)-288(dep)-28(ending)]TJ 0 -11.956 Td [(on)-466(the)-465(exact)-466(in)28(ternal)-466(data)-465(storage;)-532(giv)28(en)-466(that)-465(the)-466(c)28(hoice)-466(of)-466(storage)-465(ma)27(y)-465(b)-28(e)]TJ 0 -11.955 Td [(altered)-440(b)28(y)-440(run)28(time)-440(parameters,)-467(it)-439(is)-440(nece)-1(ssary)-439(for)-440(safet)27(y)-439(that)-440(this)-440(metho)-28(d)-440(is)]TJ 0 -11.955 Td [(called)-333(b)27(y)-333(all)-333(pro)-28(cesses.)]TJ/F27 9.9626 Tf 0 -25.793 Td [(3.1.15)-1150(Named)-383(Constan)32(ts)]TJ +/F8 9.9626 Tf 24.339 0 Td [(the)-333(list)-334(of)-333(pro)-28(cesses)-333(o)28(w)-1(n)1(ing)-334(the)-333(indices)-333(in)]TJ/F30 9.9626 Tf 183.783 0 Td [(idx)]TJ/F8 9.9626 Tf 15.691 0 Td [(.)]TJ -198.907 -11.955 Td [(Scop)-28(e:)]TJ/F27 9.9626 Tf 32.379 0 Td [(lo)-32(cal)]TJ/F8 9.9626 Tf 23.073 0 Td [(.)]TJ -55.452 -11.955 Td [(T)28(yp)-28(e:)]TJ/F27 9.9626 Tf 29.612 0 Td [(required)]TJ/F8 9.9626 Tf 41.898 0 Td [(.)]TJ -71.51 -11.955 Td [(In)28(ten)28(t:)]TJ/F27 9.9626 Tf 33.486 0 Td [(in)]TJ/F8 9.9626 Tf 9.547 0 Td [(.)]TJ -43.033 -11.956 Td [(Sp)-28(eci\014ed)-525(as:)-828(an)-526(allo)-27(catable)-526(one-dimensional)-525(arra)28(y)-525(of)-526(in)28(tegers)-525(of)-525(kind)]TJ/F30 9.9626 Tf 0 -11.955 Td [(psb_ipk_)]TJ/F8 9.9626 Tf 41.843 0 Td [(.)]TJ -66.749 -23.52 Td [(Note:)-417(th)1(is)-278(metho)-28(d)-277(ma)28(y)-278(or)-277(ma)27(y)-277(not)-278(actual)1(ly)-278(require)-277(comm)27(unications,)-288(dep)-28(ending)]TJ 0 -11.955 Td [(on)-466(the)-465(exact)-466(in)28(ternal)-466(data)-465(storage;)-532(giv)28(en)-466(that)-465(the)-466(c)28(hoice)-466(of)-466(storage)-465(ma)27(y)-465(b)-28(e)]TJ 0 -11.955 Td [(altered)-440(b)28(y)-440(run)28(time)-440(parameters,)-467(it)-439(is)-440(nece)-1(ssary)-439(for)-440(safet)27(y)-439(that)-440(this)-440(metho)-28(d)-440(is)]TJ 0 -11.956 Td [(called)-333(b)27(y)-333(all)-333(pro)-28(cesses.)]TJ/F27 9.9626 Tf 0 -28.021 Td [(3.1.15)-1150(Named)-383(Constan)32(ts)]TJ 0 g 0 G - 0 -18.389 Td [(psb)]TJ + 0 -19.135 Td [(psb)]TJ ET q -1 0 0 1 168.641 525.501 cm +1 0 0 1 168.641 518.482 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 172.078 525.302 Td [(none)]TJ +/F27 9.9626 Tf 172.078 518.283 Td [(none)]TJ ET q -1 0 0 1 196.475 525.501 cm +1 0 0 1 196.475 518.482 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q 0 g 0 G BT -/F8 9.9626 Tf 204.894 525.302 Td [(Generic)-333(no-op;)]TJ +/F8 9.9626 Tf 204.894 518.283 Td [(Generic)-333(no-op;)]TJ 0 g 0 G -/F27 9.9626 Tf -54.189 -19.685 Td [(psb)]TJ +/F27 9.9626 Tf -54.189 -21.528 Td [(psb)]TJ ET q -1 0 0 1 168.641 505.816 cm +1 0 0 1 168.641 496.955 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 172.078 505.617 Td [(ro)-32(ot)]TJ +/F27 9.9626 Tf 172.078 496.755 Td [(ro)-32(ot)]TJ ET q -1 0 0 1 193.715 505.816 cm +1 0 0 1 193.715 496.955 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q 0 g 0 G BT -/F8 9.9626 Tf 202.133 505.617 Td [(Default)-333(ro)-28(ot)-333(pro)-28(cess)-334(for)-333(broadcast)-333(and)-333(sc)-1(atter)-333(op)-28(erations;)]TJ +/F8 9.9626 Tf 202.133 496.755 Td [(Default)-333(ro)-28(ot)-333(pro)-28(cess)-334(for)-333(broadcast)-333(and)-333(sc)-1(atter)-333(op)-28(erations;)]TJ 0 g 0 G -/F27 9.9626 Tf -51.428 -19.686 Td [(psb)]TJ +/F27 9.9626 Tf -51.428 -21.527 Td [(psb)]TJ ET q -1 0 0 1 168.641 486.131 cm +1 0 0 1 168.641 475.427 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 172.078 485.931 Td [(nohalo)]TJ +/F27 9.9626 Tf 172.078 475.228 Td [(nohalo)]TJ ET q -1 0 0 1 205.705 486.131 cm +1 0 0 1 205.705 475.427 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q 0 g 0 G BT -/F8 9.9626 Tf 214.123 485.931 Td [(Do)-333(not)-334(fetc)28(h)-333(halo)-333(e)-1(l)1(e)-1(men)28(ts;)]TJ +/F8 9.9626 Tf 214.123 475.228 Td [(Do)-333(not)-334(fetc)28(h)-333(halo)-333(e)-1(l)1(e)-1(men)28(ts;)]TJ 0 g 0 G -/F27 9.9626 Tf -63.418 -19.685 Td [(psb)]TJ +/F27 9.9626 Tf -63.418 -21.528 Td [(psb)]TJ ET q -1 0 0 1 168.641 466.445 cm +1 0 0 1 168.641 453.899 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 172.078 466.246 Td [(halo)]TJ +/F27 9.9626 Tf 172.078 453.7 Td [(halo)]TJ ET q -1 0 0 1 193.611 466.445 cm +1 0 0 1 193.611 453.899 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q 0 g 0 G BT -/F8 9.9626 Tf 202.03 466.246 Td [(F)83(etc)28(h)-333(halo)-333(e)-1(lemen)28(ts)-333(from)-333(neigh)27(b)-27(ouring)-334(pro)-27(cesse)-1(s;)]TJ +/F8 9.9626 Tf 202.03 453.7 Td [(F)83(etc)28(h)-333(halo)-333(e)-1(lemen)28(ts)-333(from)-333(neigh)27(b)-27(ouring)-334(pro)-27(cesse)-1(s;)]TJ 0 g 0 G -/F27 9.9626 Tf -51.325 -19.686 Td [(psb)]TJ +/F27 9.9626 Tf -51.325 -21.528 Td [(psb)]TJ ET q -1 0 0 1 168.641 446.76 cm +1 0 0 1 168.641 432.371 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 172.078 446.56 Td [(sum)]TJ +/F27 9.9626 Tf 172.078 432.172 Td [(sum)]TJ ET q -1 0 0 1 193.197 446.76 cm +1 0 0 1 193.197 432.371 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q 0 g 0 G BT -/F8 9.9626 Tf 201.616 446.56 Td [(Sum)-333(o)27(v)28(erlapp)-27(ed)-334(elemen)28(ts)]TJ +/F8 9.9626 Tf 201.616 432.172 Td [(Sum)-333(o)27(v)28(erlapp)-27(ed)-334(elemen)28(ts)]TJ 0 g 0 G -/F27 9.9626 Tf -50.911 -19.685 Td [(psb)]TJ +/F27 9.9626 Tf -50.911 -21.528 Td [(psb)]TJ ET q -1 0 0 1 168.641 427.074 cm +1 0 0 1 168.641 410.844 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 172.078 426.875 Td [(a)32(vg)]TJ +/F27 9.9626 Tf 172.078 410.644 Td [(a)32(vg)]TJ ET q -1 0 0 1 189.792 427.074 cm +1 0 0 1 189.792 410.844 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q 0 g 0 G BT -/F8 9.9626 Tf 198.211 426.875 Td [(Av)28(erage)-334(o)28(v)28(erlapp)-28(ed)-333(elemen)28(ts)]TJ +/F8 9.9626 Tf 198.211 410.644 Td [(Av)28(erage)-334(o)28(v)28(erlapp)-28(ed)-333(elemen)28(ts)]TJ 0 g 0 G -/F27 9.9626 Tf -47.506 -19.685 Td [(psb)]TJ +/F27 9.9626 Tf -47.506 -21.527 Td [(psb)]TJ ET q -1 0 0 1 168.641 407.389 cm +1 0 0 1 168.641 389.316 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 172.078 407.19 Td [(comm)]TJ +/F27 9.9626 Tf 172.078 389.117 Td [(comm)]TJ ET q -1 0 0 1 202.681 407.389 cm +1 0 0 1 202.681 389.316 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 206.118 407.19 Td [(halo)]TJ +/F27 9.9626 Tf 206.118 389.117 Td [(halo)]TJ ET q -1 0 0 1 227.651 407.389 cm +1 0 0 1 227.651 389.316 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q 0 g 0 G BT -/F8 9.9626 Tf 236.07 407.19 Td [(Exc)28(hange)-333(data)-334(based)-333(on)-333(the)]TJ/F30 9.9626 Tf 126.387 0 Td [(halo_index)]TJ/F8 9.9626 Tf 55.624 0 Td [(list;)]TJ +/F8 9.9626 Tf 236.07 389.117 Td [(Exc)28(hange)-333(data)-334(based)-333(on)-333(the)]TJ/F30 9.9626 Tf 126.387 0 Td [(halo_index)]TJ/F8 9.9626 Tf 55.624 0 Td [(list;)]TJ 0 g 0 G -/F27 9.9626 Tf -267.376 -19.686 Td [(psb)]TJ +/F27 9.9626 Tf -267.376 -21.528 Td [(psb)]TJ ET q -1 0 0 1 168.641 387.704 cm +1 0 0 1 168.641 367.788 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 172.078 387.504 Td [(comm)]TJ +/F27 9.9626 Tf 172.078 367.589 Td [(comm)]TJ ET q -1 0 0 1 202.681 387.704 cm +1 0 0 1 202.681 367.788 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 206.118 387.504 Td [(ext)]TJ +/F27 9.9626 Tf 206.118 367.589 Td [(ext)]TJ ET q -1 0 0 1 222.559 387.704 cm +1 0 0 1 222.559 367.788 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q 0 g 0 G BT -/F8 9.9626 Tf 230.978 387.504 Td [(Exc)28(hange)-333(data)-334(based)-333(on)-333(the)]TJ/F30 9.9626 Tf 126.387 0 Td [(ext_index)]TJ/F8 9.9626 Tf 50.394 0 Td [(list;)]TJ +/F8 9.9626 Tf 230.978 367.589 Td [(Exc)28(hange)-333(data)-334(based)-333(on)-333(the)]TJ/F30 9.9626 Tf 126.387 0 Td [(ext_index)]TJ/F8 9.9626 Tf 50.394 0 Td [(list;)]TJ 0 g 0 G -/F27 9.9626 Tf -257.054 -19.685 Td [(psb)]TJ +/F27 9.9626 Tf -257.054 -21.528 Td [(psb)]TJ ET q -1 0 0 1 168.641 368.018 cm +1 0 0 1 168.641 346.26 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 172.078 367.819 Td [(comm)]TJ +/F27 9.9626 Tf 172.078 346.061 Td [(comm)]TJ ET q -1 0 0 1 202.681 368.018 cm +1 0 0 1 202.681 346.26 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 206.118 367.819 Td [(o)32(vr)]TJ +/F27 9.9626 Tf 206.118 346.061 Td [(o)32(vr)]TJ ET q -1 0 0 1 222.981 368.018 cm +1 0 0 1 222.981 346.26 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q 0 g 0 G BT -/F8 9.9626 Tf 231.4 367.819 Td [(Exc)28(hange)-333(data)-334(based)-333(on)-333(the)]TJ/F30 9.9626 Tf 126.387 0 Td [(ovrlap_index)]TJ/F8 9.9626 Tf 66.085 0 Td [(list;)]TJ +/F8 9.9626 Tf 231.4 346.061 Td [(Exc)28(hange)-333(data)-334(based)-333(on)-333(the)]TJ/F30 9.9626 Tf 126.387 0 Td [(ovrlap_index)]TJ/F8 9.9626 Tf 66.085 0 Td [(list;)]TJ 0 g 0 G -/F27 9.9626 Tf -273.167 -19.685 Td [(psb)]TJ +/F27 9.9626 Tf -273.167 -21.528 Td [(psb)]TJ ET q -1 0 0 1 168.641 348.333 cm +1 0 0 1 168.641 324.733 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 172.078 348.134 Td [(comm)]TJ +/F27 9.9626 Tf 172.078 324.533 Td [(comm)]TJ ET q -1 0 0 1 202.681 348.333 cm +1 0 0 1 202.681 324.733 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q BT -/F27 9.9626 Tf 206.118 348.134 Td [(mo)32(v)]TJ +/F27 9.9626 Tf 206.118 324.533 Td [(mo)32(v)]TJ ET q -1 0 0 1 227.81 348.333 cm +1 0 0 1 227.81 324.733 cm []0 d 0 J 0.398 w 0 0 m 3.437 0 l S Q 0 g 0 G BT -/F8 9.9626 Tf 236.229 348.134 Td [(Exc)28(hange)-333(data)-334(based)-333(on)-333(the)]TJ/F30 9.9626 Tf 126.387 0 Td [(ovr_mst_idx)]TJ/F8 9.9626 Tf 60.855 0 Td [(list;)]TJ/F16 11.9552 Tf -272.766 -27.786 Td [(3.2)-1125(Sparse)-375(Matrix)-375(class)]TJ/F8 9.9626 Tf 0 -18.389 Td [(The)]TJ/F30 9.9626 Tf 20.653 0 Td [(psb)]TJ +/F8 9.9626 Tf 236.229 324.533 Td [(Exc)28(hange)-333(data)-334(based)-333(on)-333(the)]TJ/F30 9.9626 Tf 126.387 0 Td [(ovr_mst_idx)]TJ/F8 9.9626 Tf 60.855 0 Td [(list;)]TJ/F16 11.9552 Tf -272.766 -30.014 Td [(3.2)-1125(Sparse)-375(Matrix)-375(class)]TJ/F8 9.9626 Tf 0 -19.135 Td [(The)]TJ/F30 9.9626 Tf 20.653 0 Td [(psb)]TJ ET q -1 0 0 1 187.676 302.158 cm +1 0 0 1 187.676 275.584 cm []0 d 0 J 0.398 w 0 0 m 3.138 0 l S Q BT -/F30 9.9626 Tf 190.814 301.959 Td [(Tspmat)]TJ +/F30 9.9626 Tf 190.814 275.384 Td [(Tspmat)]TJ ET q -1 0 0 1 222.824 302.158 cm +1 0 0 1 222.824 275.584 cm []0 d 0 J 0.398 w 0 0 m 3.138 0 l S Q BT -/F30 9.9626 Tf 225.962 301.959 Td [(type)]TJ/F8 9.9626 Tf 24.416 0 Td [(class)-351(con)28(tains)-351(all)-351(information)-350(ab)-28(out)-351(the)-351(lo)-27(cal)-351(p)-28(ortion)-351(of)]TJ -99.673 -11.955 Td [(the)-249(sparse)-249(matrix)-248(and)-249(its)-249(storage)-249(mo)-27(de.)-417(Its)-248(design)-249(is)-249(based)-249(on)-248(the)-249(ST)83(A)84(TE)-249(design)]TJ 0 -11.955 Td [(pattern)-347([)]TJ +/F30 9.9626 Tf 225.962 275.384 Td [(type)]TJ/F8 9.9626 Tf 24.416 0 Td [(class)-351(con)28(tains)-351(all)-351(information)-350(ab)-28(out)-351(the)-351(lo)-27(cal)-351(p)-28(ortion)-351(of)]TJ -99.673 -11.955 Td [(the)-249(sparse)-249(matrix)-248(and)-249(its)-249(storage)-249(mo)-27(de.)-417(Its)-248(design)-249(is)-249(based)-249(on)-248(the)-249(ST)83(A)84(TE)-249(design)]TJ 0 -11.955 Td [(pattern)-347([)]TJ 1 0 0 rg 1 0 0 RG [(13)]TJ 0 g 0 G @@ -6589,61 +6589,37 @@ BT 0 0 1 rg 0 0 1 RG [-347(4)]TJ 0 g 0 G - [-347(where)]TJ/F30 9.9626 Tf 0 -11.956 Td [(T)]TJ/F8 9.9626 Tf 8.551 0 Td [(is)-333(a)-334(placeholder)-333(for)-333(the)-334(data)-333(t)28(yp)-28(e)-333(and)-333(precision)-334(v)56(arian)28(ts)]TJ + [-347(where)]TJ/F30 9.9626 Tf 0 -11.955 Td [(T)]TJ/F8 9.9626 Tf 8.551 0 Td [(is)-333(a)-334(placeholder)-333(for)-333(the)-334(data)-333(t)28(yp)-28(e)-333(and)-333(precision)-334(v)56(arian)28(ts)]TJ 0 g 0 G -/F27 9.9626 Tf -8.551 -19.445 Td [(S)]TJ +/F27 9.9626 Tf -8.551 -21.127 Td [(S)]TJ 0 g 0 G /F8 9.9626 Tf 11.346 0 Td [(Single)-333(precision)-334(real;)]TJ 0 g 0 G -/F27 9.9626 Tf -11.346 -19.685 Td [(D)]TJ +/F27 9.9626 Tf -11.346 -21.528 Td [(D)]TJ 0 g 0 G /F8 9.9626 Tf 13.768 0 Td [(Double)-333(precision)-334(real;)]TJ 0 g 0 G -/F27 9.9626 Tf -13.768 -19.686 Td [(C)]TJ +/F27 9.9626 Tf -13.768 -21.528 Td [(C)]TJ 0 g 0 G /F8 9.9626 Tf 13.256 0 Td [(Single)-333(precision)-334(complex;)]TJ 0 g 0 G -/F27 9.9626 Tf -13.256 -19.685 Td [(Z)]TJ +/F27 9.9626 Tf -13.256 -21.527 Td [(Z)]TJ 0 g 0 G -/F8 9.9626 Tf 11.983 0 Td [(Double)-333(precision)-334(complex.)]TJ -11.983 -19.446 Td [(The)-222(actual)-222(data)-223(is)-222(con)28(tained)-222(in)-222(the)-223(p)-27(olymorphic)-223(comp)-27(onen)27(t)]TJ/F30 9.9626 Tf 255.514 0 Td [(a%a)]TJ/F8 9.9626 Tf 17.905 0 Td [(of)-222(t)28(yp)-28(e)]TJ/F30 9.9626 Tf 31.549 0 Td [(psb)]TJ -ET -q -1 0 0 1 471.991 168.346 cm -[]0 d 0 J 0.398 w 0 0 m 3.138 0 l S -Q -BT -/F30 9.9626 Tf 475.13 168.146 Td [(T)]TJ -ET -q -1 0 0 1 480.988 168.346 cm -[]0 d 0 J 0.398 w 0 0 m 3.138 0 l S -Q -BT -/F30 9.9626 Tf 484.126 168.146 Td [(base)]TJ -ET -q -1 0 0 1 505.675 168.346 cm -[]0 d 0 J 0.398 w 0 0 m 3.138 0 l S -Q -BT -/F30 9.9626 Tf 508.813 168.146 Td [(sparse)]TJ -ET -q -1 0 0 1 540.823 168.346 cm -[]0 d 0 J 0.398 w 0 0 m 3.138 0 l S -Q -BT -/F30 9.9626 Tf 543.961 168.146 Td [(mat)]TJ/F8 9.9626 Tf 15.691 0 Td [(;)]TJ -408.947 -11.955 Td [(its)-300(sp)-28(eci\014c)-301(la)28(y)28(out)-300(can)-301(b)-27(e)-301(c)28(hosen)-301(d)1(ynamically)-301(among)-300(the)-301(pr)1(e)-1(d)1(e)-1(\014n)1(e)-1(d)-300(t)28(yp)-28(es,)-307(or)-300(an)]TJ 0 -11.955 Td [(en)28(tirely)-419(new)-419(storage)-419(la)28(y)27(out)-419(can)-419(b)-27(e)-419(implemen)27(ted)-419(an)1(d)-419(passe)-1(d)-418(to)-419(the)-419(library)-419(at)]TJ 0 -11.955 Td [(run)28(time)-420(via)-419(the)]TJ/F30 9.9626 Tf 73.447 0 Td [(psb_spasb)]TJ/F8 9.9626 Tf 51.252 0 Td [(routine.)-703(The)-419(follo)28(wing)-420(v)28(ery)-419(common)-420(formats)-419(are)]TJ -124.699 -11.955 Td [(precompiled)-333(in)-334(PSBLAS)-333(and)-333(th)28(us)-334(are)-333(alw)28(a)28(ys)-334(a)28(v)56(ailable:)]TJ +/F8 9.9626 Tf 11.983 0 Td [(Double)-333(precision)-334(complex;)]TJ +0 g 0 G +/F27 9.9626 Tf -11.983 -21.528 Td [(LS,LD,LC,LZ)]TJ +0 g 0 G +/F8 9.9626 Tf 72.519 0 Td [(Same)-446(n)28(umeric)-445(t)27(y)1(p)-28(e)-446(as)-445(ab)-28(o)28(v)28(e)-1(,)-473(but)-445(with)]TJ/F30 9.9626 Tf 179.211 0 Td [(psb_lpk_)]TJ/F8 9.9626 Tf 46.281 0 Td [(in)28(teger)-446(in-)]TJ -273.104 -11.955 Td [(dices.)]TJ 0 g 0 G - 166.874 -29.888 Td [(16)]TJ + 141.967 -29.888 Td [(16)]TJ 0 g 0 G ET endstream 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