#! /usr/bin/python3 import networkx as nx from utils import * import warnings import time import random import argparse warnings.filterwarnings("ignore") def random_sample(graph, k): nodes = list(graph.nodes()) n = int(k*len(nodes)) nodes_sample = random.sample(nodes, n) G = graph.subgraph(nodes_sample) if not nx.is_connected(G): print("Graph is not connected. Taking the largest connected component") connected = max(nx.connected_components(G), key=len) G_connected = graph.subgraph(connected) print(nx.is_connected(G_connected)) print("Number of nodes in the sampled graph: ", G.number_of_nodes()) print("Number of edges in the sampled graph: ", G.number_of_edges()) return G_connected if __name__ == "__main__": # use argparse to take as input the name of the graph, the options are "foursquare", "gowalla" and "brightkite" parser = argparse.ArgumentParser() parser.add_argument("graph", help="Name of the graph to be used. Options are 'foursquare', 'gowalla' and 'brightkite'") parser.add_argument("k", help="Percentage of nodes to be sampled. Needs to be a float between 0 and 1") parser.add_argument("niter", help="Number of rewiring per edge. Needs to be an integer. Default is 5") parser.add_argument("nrand", help="Number of random graphs. Needs to be an integer. Default is 5") parser.add_help = True args = parser.parse_args() # if no input is given for niter and nrand, set them to default values if args.niter == None: print("No input for niter. Setting it to default value: 5") args.niter = 5 if args.nrand == None: print("No input for nrand. Setting it to default value: 5") args.nrand = 5 # create the graph. G = create_graph_from_checkins('name') where name is the input argument of graph G = create_graph_from_checkins(str(args.graph)) G.name = str(args.graph) + " Checkins Graph" # sample the graph G_sample = random_sample(G, float(args.k)) # compute omega start = time.time() print("\nComputing omega for graph: ", G.name) omega = nx.omega(G_sample, niter = int(args.niter), nrand = int(args.nrand)) end = time.time() print("Omega coefficient for graph {}: {}".format(G.name, omega)) print("Time taken: ", round(end-start,2))