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258 lines
3.0 KiB
Plaintext
258 lines
3.0 KiB
Plaintext
3 weeks ago
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skipped 2418 lines of type: P
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Number of entries: 8347110
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Computing graph stats...
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Computing nodes degrees...
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Computing histogram...
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Stats:
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- Nodes: 3460855
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- Edges: 3459968
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Graph degrees histogram (degree/count):
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- 1: 2123
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- 2: 2017235
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- 3: 280142
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- 4: 1047601
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- 10: 1740
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- 235: 1
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- 269: 1
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- 310: 1
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- 439: 1
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- 454: 1
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Computing edge types...
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Computing edge types histogram...
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Edge types histogram (type/count):
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- TreeEdge: 3459280
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- BackEdge: 33402
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- ForwardEdge: 352745
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- CrossEdge: 1041433
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Removing back edges...
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Computing edge types...
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Computing edge types histogram...
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Edge types histogram (type/count):
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- TreeEdge: 3459280
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- ForwardEdge: 352745
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- CrossEdge: 1041433
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Computing connected components...
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Computing sizes histogram...
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Connected components histogram (size/count):
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- 2: 531
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- 3: 1
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- 4: 2
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- 8: 1
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- 92: 1
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- 135: 1
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- 293: 1
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- 305: 1
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- 2286: 1
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- 5040: 1
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- 5639: 1
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- 9714: 1
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- 12885: 1
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- 30694: 1
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- 40082: 1
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- 50661: 1
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- 58959: 1
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- 101785: 1
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- 149495: 1
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- 160235: 1
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- 518148: 1
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- 951466: 1
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- 1361860: 1
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Picking largest connected component...
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Computing graph stats...
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Computing nodes degrees...
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Computing histogram...
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Stats:
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- Nodes: 1361860
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- Edges: 1356266
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Graph degrees histogram (degree/count):
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- 1: 2547
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- 2: 790748
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- 3: 124055
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- 4: 397684
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- 5: 29479
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- 6: 8481
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- 7: 3512
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- 8: 1819
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- 9: 1032
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- 10: 666
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- 11: 448
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- 12: 346
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- 13: 207
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- 14: 167
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- 15: 139
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- 16: 92
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- 17: 81
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- 18: 58
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- 19: 44
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- 20: 35
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- 21: 29
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- 22: 28
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- 23: 24
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- 24: 24
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- 25: 11
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- 26: 4
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- 27: 13
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- 28: 9
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- 29: 13
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- 30: 5
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- 31: 4
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- 32: 2
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- 33: 3
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- 34: 5
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- 35: 2
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- 36: 4
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- 37: 1
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- 38: 1
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- 39: 1
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- 40: 1
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- 41: 1
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- 42: 1
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- 43: 5
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- 44: 4
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- 45: 2
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- 47: 1
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- 50: 1
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- 52: 1
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- 54: 2
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- 57: 1
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- 64: 1
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- 67: 1
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- 72: 1
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- 73: 1
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- 78: 1
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- 83: 1
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- 100: 1
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- 119: 1
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- 149: 1
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- 163: 1
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- 235: 1
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Computing edge types...
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Computing edge types histogram...
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Edge types histogram (type/count):
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- TreeEdge: 1361622
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- ForwardEdge: 110203
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- CrossEdge: 442890
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Cleaning up...
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cargo run --release -- show -i dataset/chrX.hprc-v1.0-pggb.local.gfa 136.17s user 28.10s system 89% cpu 3:03.85 total
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