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Progetto di ASD per l'a.a. 2023/2024 su pangenome graphs
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Antonio De Lucreziis ce6dcb0551 generic graph code and visualization 10 months ago
dataset some experiments 10 months ago
examples generic graph code and visualization 10 months ago
src generic graph code and visualization 10 months ago
.gitignore initial commit 10 months ago
Cargo.lock generic graph code and visualization 10 months ago
Cargo.toml generic graph code and visualization 10 months ago
README.md some experiments 10 months ago

README.md

Progetto ASD 2023/2024

Usage

  • cargo run -- --help

    Display help message.

  • cargo run -- show -i ./dataset/example.gfa

    Parses the GFA file and prints the graph and various information.

Example GFA

H	VN:Z:1.0
S	11	G
S	12	A
S	13	T
S	14	T
S	15	A
S	16	C
S	17	A
S	21	G
S	22	A
S	23	T
S	24	T
S	25	A
L	11	+	12	+	*
L	11	+	13	+	*
L	12	+	14	+	*
L	13	+	14	+	*
L	14	+	15	+	*
L	14	+	16	+	*
L	15	+	17	+	*
L	16	+	17	+	*
L	21	+	22	+	*
L	21	+	23	+	*
L	22	+	24	+	*
L	23	+	24	-	*
L	24	+	25	+	*
P	A	11+,12+,14+,15+,17+	*,*,*,*
P	B	21+,22+,24+,25+	*,*,*
W	sample	1	A	0	5	>11>12>14>15>17
W	sample	2	A	0	5	>11>13>14>16>17
W	sample	1	B	0	5	>21>22>24<23<21
W	sample	2	B	0	4	>21>22>24>25

Note