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Adding formating for paper references and code highlighting

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Soren Rasmussen
2017-10-31 12:12:45 +00:00
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README.md
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@@ -2,19 +2,19 @@ PSBLAS library, version 3.5.
============================
The architecture of the Fortran 2003 sparse BLAS is described in:
S. Filippone, A. Buttari
Object-Oriented Techniques for Sparse Matrix Computations in Fortran
2003, ACM Trans. on Math. Software, vol. 38, No. 4, 2012.
>S. Filippone, A. Buttari. Object-Oriented Techniques for Sparse Matrix
>Computations in Fortran 2003, ACM Trans. on Math. Software, vol. 38, No.
4, 2012.
The ideas are explored further with the paper:
V. Cardellini, S. Filippone and D. Rouson
Design Patterns for sparse-matrix computations on hybrid CPU/GPU
platforms, Scientific Programming, 22(2014), pp.1-19.
>V. Cardellini, S. Filippone and D. Rouson. Design Patterns for
>sparse-matrix computations on hybrid CPU/GPU platforms, Scientific
>Programming, 22(2014), pp.1-19.
Version 1.0 of the library is described in:
S. Filippone, M. Colajanni
PSBLAS: A library for parallel linear algebra computation on sparse
matrices, ACM Trans. on Math. Software, 26(4), Dec. 2000, pp. 527-550.
>S. Filippone, M. Colajanni. PSBLAS: A library for parallel linear
>algebra computation on sparse matrices, ACM Trans. on Math. Software,
>26(4), Dec. 2000, pp. 527-550.
UTILITIES
@@ -36,9 +36,9 @@ We originally included a modified implementation of some of the Sparker
(serial sparse BLAS) material; this has been completely rewritten, way
beyond the intention(s) and responsibilities of the original developers.
The main reference for the serial sparse BLAS is:
Duff, I., Marrone, M., Radicati, G., and Vittoli, C.
Level 3 basic linear algebra subprograms for sparse matrices: a user
level interface, ACM Trans. Math. Softw., 23(3), 379-401, 1997.
>Duff, I., Marrone, M., Radicati, G., and Vittoli, C. Level 3 basic
>linear algebra subprograms for sparse matrices: a user level interface,
>ACM Trans. Math. Softw., 23(3), 379-401, 1997.
INSTALLING
@@ -55,20 +55,20 @@ prerequisites (see also SERIAL below):
3. We have had good results with the METIS library, from
http://www-users.cs.umn.edu/~karypis/metis/metis/main.html.
This is optional; it is used in the util and test/fileread
directories but only if you specify --with-metis.
directories but only if you specify `--with-metis`.
4. If you have the AMD package of Davis, Duff and Amestoy, you can
specify --with-amd (see ./configure --help for more details).
specify `--with-amd` (see `./configure --help` for more details).
The configure script will generate a Make.inc file suitable for building
the library. The script is capable of recognizing the needed libraries
with their default names; if they are in unusual places consider adding
the paths with --with-libs, or explicitly specifying the names in
--with-blas, etc. Please note that a common way for the configure script
the paths with `--with-libs`, or explicitly specifying the names in
`--with-blas`, etc. Please note that a common way for the configure script
to fail is to specify inconsistent MPI vs. plain compilers, either
directly or indirectly via environment variables; e.g. specifying the
Intel compiler with FC=ifort while at the same time having an
MPIFC=mpif90 which points to GNU Fortran. The best way to avoid this
Intel compiler with `FC=ifort` while at the same time having an
`MPIFC=mpif90` which points to GNU Fortran. The best way to avoid this
situation is (in our opinion) to use the environment modules package
(see http://modules.sourceforge.net/), and load the relevant
variables with (e.g.)
@@ -85,20 +85,20 @@ After you have Make.inc fixed, run
make
```
to compile the library; go to the test directory and its subdirectories
to get test programs done. If you specify --prefix=/path you can do make
to get test programs done. If you specify `--prefix=/path` you can do make
install and the libraries will be installed under /path/lib, while the
module files will be installed under /path/include.
SERIAL
------
Configuring with --enable-serial will provide a fake MPI stub library
Configuring with `--enable-serial` will provide a fake MPI stub library
that enables running in pure serial mode; no MPI installation is needed
in this case (but note that the fake MPI stubs are only guaranteed to
cover what we use internally, it's not a complete replacement).
LONG INTEGERS
-------------
We have an experimental flag --enable-long-integers that will enable
We have an experimental flag `--enable-long-integers` that will enable
having 8-byte integer data, allowing an index space larger than 2G; some
small cases have been tested but we do not offer full guarantee (yet).