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Fixed call to BLACS_SET. |
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README
This directory contains the PSBLAS library, version 2.2 Version 1.0 of the library was described in: S. Filippone, M. Colajanni PSBLAS: A library for parallel linear algebra computation on sparse matrices ACM Trans. on Math. Software, 26(4), Dec. 2000, pp. 527-550. PLATFORMS: The compilation process relies on the choice of an appropriate Make.inc file; we have tested with AIX XLF, Intel ifort/Linux, Nag f95/Linux, GNU Fortran/Linux, Sun Forte 6.2. If you succeed in compiling with other compiler/operating systems please let us know. LINUX: On Linux we work with the GCC compiler; note that we require version 4.2.0 (or later) as it contains support for ALLOCATABLEs (as specified in TR15581). For the Intel compilers, we recommend version 9.1 or later; previous versions of the library have been compiled with version 7 and 8 of ifort. IBM SP. The library has been tested on an IBM SP5, with XLC and XLF version 10.1 and the IBM ESSL/PESSL versions of the BLAS and the BLACS. The setting F90=xlf95 -qsuffix=f=f90:cpp=F90 in Make.inc.sp5 takes care of the f90/F90 extensions. UTILITIES The test/util directory contains some utilities to convert to/from Harwell-Boeing and MatrixMarket file formats. DOCUMENTATION See userguide.pdf Please consult the sample programs, especially test/pargen/ppde.f90. OTHER SOFTWARE CREDITS We include our modified implementation of some of the Sparker (serial sparse BLAS) material, e.g. Jagged diagonal, plus a number of extensions of our own design. The original file spblas.f can be downloaded from matisa.cc.rl.ac.uk; of course any bugs in our implementation are our own to fix. The main reference for the serial sparse BLAS is: Duff, I., Marrone, M., Radicati, G., and Vittoli, C. Level 3 basic linear algebra subprograms for sparse matrices: a user level interface ACM Trans. Math. Softw., 23(3), 379-401, 1997. In the multilevel preconditioners we use SMMP by Randolph E. Bank and Craig C. Douglas na.bank@na-net.ornl.gov and na.cdouglas@na-net.ornl.gov; we wrapped it in a Fortran 95 interface with dynamic memory allocation. INSTALLING To compile and run our software you will need the following prerequisites (see also SERIAL below): 1. A working version of MPI 2. The MPI version of the BLACS from http://www.netlib.org/blacs/index.html 3. A version of the BLAS; if you don't have a specific version for your platform you may try ATLAS available from http://math-atlas.sourceforge.net/ 4. We have had good results with the METIS library, from http://www-users.cs.umn.edu/~karypis/metis/metis/main.html This is optional: it is used in the util and test/fileread directories if you define the HAVE_METIS directive. We offer an experimental configure script: if everything works well, it will generate a Make.inc file suitable for building the library. The script is capable of recognizing the needed libraries with their default names; if they are in unusual places consider adding the paths with --with-lib, or explicitly specify the names in --with-blas and friends. Please note that a common way for the configure script to fail is to specify inconsistent MPI vs. plain compilers, either directly or indirectly via environment variables; e.g. specifying the Intel compiler with FC=ifort and the default MPIFC=mpif90 which points to GNU Fortran 4.1. The best way to avoid this situation is (in our opinion) to use the environment modules package (see http://modules.sourceforge.net/), and load the relevant variables with (e.g.) module load gnu42 mpich This will delegate to the modules setup to make sure that the version of mpich in use is the one compiled with the gnu42 compilers. After the configure script has completed you can always tweak the Make.inc file yourself. An annoying problem exists with some versions of MPICH: the configure script will set -DMPI_MOD, which is to say, the MPI call interfaces will be resolved by using the MPI Fortran module. However usage of the module may cause compilation to fail if coupled with the debugging option -g, because the compiler complains that it cannot find any matching interface. The solution: either take out the -g option, or, if you really need to debug, force -DMPI_H in place of -DMPI_MOD. As a backup alternative, you can choose a Make.inc.XXX file in directory Make that fits your compilers, modify the paths to libraries to match your installation and copy it to Make.inc in the top directory. Then run make to compile the library; go to the test directory and its subdirectories to get test programs done. SERIAL: We now provide an (experimental) option to run in serial mode. This has only been tested with GCC but it should work with the others as well. In serial mode you don't need the prereqs 1 and 2 above, and you need to use the -serialmpi Make.inc. BEWARE: we only provide a VERY minimal set of fake mpi routines that is known to work with our codes; specifically, we do not handle a process doing send/receives to itself, neither do we handle user defined data types. TODO: Fix all reamining bugs. Bugs? We dont' have any ! ;-) The PSBLAS team. Contact: Salvatore Filippone salvatore.filippone@uniroma2.it Credits for version 2.2: Michele Martone contributed the configure machinery. Credits for version 2.0: Salvatore Filippone Alfredo Buttari In a sister package we are going to provide a library of multilevel parallel preconditioners that were developed with the contribution of: Pasqua D'Ambra Daniela di Serafino In that package we will provide interfaces to the following software packages: -- SuperLU 3.0 http://crd.lbl.gov/~xiaoye/SuperLU/ -- UMFPACK 4.4 http://www.cise.ufl.edu/research/sparse/umfpack/ These are optional, you only need to install them if you actually want to use them. The MLD2P4 package will be published soon, watch this space!. Credits for version 1.0: Salvatore Filippone Michele Colajanni Fabio Cerioni Stefano Maiolatesi Dario Pascucci